Browse Element(s) Details

Os.34102.1.S1_a_at

Description

gb:AK072831.1
DB_XREF= gi:32982854
TID=Os.34102.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OJ1364E02.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138M07, full insert sequence.
FL= gb:AK072831.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g16000	10/11	Variant SH3 domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g15930	Os.15901.1.S1_at	11/11	3	+	8769800..8774784	OTU-like cysteine protease family protein, expressed
LOC_Os03g15930	Os.15901.2.S1_x_at	9/11	3	+	8769800..8774784	OTU-like cysteine protease family protein, expressed
LOC_Os03g15930	Os.15901.2.S1_at	8/11	3	+	8769800..8774784	OTU-like cysteine protease family protein, expressed
LOC_Os03g15940	Os.8225.1.S1_at	11/11	3	+	8776940..8778881	Pollen-specific protein SF3, putative, expressed
LOC_Os03g15950	Os.14701.1.S1_a_at	11/11	3	+	8779850..8785587	Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15950	Os.57467.1.A1_x_at	5/11	3	+	8779850..8785587	Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15960	Os.12244.1.S1_at	11/11	3	+	8784620..8785609	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960	Os.57467.1.S1_x_at	5/11	3	+	8784620..8785609	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960	Os.37773.1.S1_x_at	2/11	3	+	8784620..8785609	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15970	OsAffx.10071.1.S1_at	11/11	3	+	8786381..8788265	transposon protein, putative, Mariner sub-class
LOC_Os03g15980	OsAffx.31659.1.S1_s_at	11/11	3	+	8788487..8788932	hypothetical protein
LOC_Os03g15980	OsAffx.31659.2.S1_at	8/11	3	+	8788487..8788932	hypothetical protein
LOC_Os03g15990	OsAffx.25104.1.S1_at	11/11	3	+	8794075..8796397	hydroxyproline-rich glycoprotein family protein, putative
LOC_Os03g16000	Os.34102.1.S1_a_at	10/11	3	+	8798197..8803386	Variant SH3 domain containing protein, expressed
LOC_Os03g16010	Os.10798.1.S1_at	11/11	3	+	8806805..8812628	protein kinase, putative, expressed
LOC_Os03g16010	Os.26733.3.S1_x_at	3/11	3	+	8806805..8812628	protein kinase, putative, expressed
LOC_Os03g16020	Os.22731.1.S1_at	11/11	3	+	8812766..8813529	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020	Os.57467.1.S1_x_at	6/11	3	+	8812766..8813529	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020	Os.37773.1.S1_x_at	4/11	3	+	8812766..8813529	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030	Os.37773.1.S1_x_at	11/11	3	+	8813884..8814654	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030	Os.37773.1.S1_at	11/11	3	+	8813884..8814654	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030	Os.57467.1.S1_x_at	5/11	3	+	8813884..8814654	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040	Os.22730.1.S1_at	11/11	3	+	8816812..8817676	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040	Os.37773.1.S1_x_at	2/11	3	+	8816812..8817676	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040	Os.57467.1.S1_x_at	1/11	3	+	8816812..8817676	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16050	Os.11756.1.S1_at	11/11	3	+	8820321..8822122	Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os03g16050	Os.11756.1.S1_s_at	11/11	3	+	8820321..8822122	Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0012505	cellular_component	endomembrane system
GO:0030276	molecular_function	clathrin binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.34102.1.S1_a_at--12--441	1	Chr03:8801876..8801900 (25 bp)	GACTGAAACCAGTGAACCTACAAGG	LOC_Os03g16000
Os.34102.1.S1_a_at--590--811	1	Chr03:8801899..8801923 (25 bp)	GGACTGAAACTAGTGAACCTACAAG	LOC_Os03g16000
Os.34102.1.S1_a_at--1094--735	1	Chr03:8801911..8801935 (25 bp)	GTGAACCTACAAGGAATGGTCAGGA	LOC_Os03g16000
Os.34102.1.S1_a_at--357--1011	1	NONE	TATGTTGGAGAGGTAATCCATCCAT	NONE
Os.34102.1.S1_a_at--565--707	1	Chr03:8802626..8802650 (25 bp)	GTAATCCATCCATTCGATGCTCAGG	LOC_Os03g16000
Os.34102.1.S1_a_at--99--635	1	Chr03:8802641..8802665 (25 bp)	GATGCTCAGGCTGATGGCGAGCTCA	LOC_Os03g16000
Os.34102.1.S1_a_at--1042--845	1	Chr03:8802655..8802679 (25 bp)	TGGCGAGCTCAGTATTTCCGTGGGA	LOC_Os03g16000
Os.34102.1.S1_a_at--98--929	1	Chr03:8802671..8802695 (25 bp)	TCCGTGGGAGATTATGTTGTGGTCC	LOC_Os03g16000
Os.34102.1.S1_a_at--982--161	1	Chr03:8802989..8803013 (25 bp)	AGCTGGCTGGTTCCCATCTGCCTAT	LOC_Os03g16000
Os.34102.1.S1_a_at--583--669	1	Chr03:8802998..8803022 (25 bp)	GTTCCCATCTGCCTATGTGGAGCAG	LOC_Os03g16000
Os.34102.1.S1_a_at--251--503	1	Chr03:8803019..8803043 (25 bp)	GCAGAGGGACAAAGCCCCGGCAAGT	LOC_Os03g16000

Target Sequence

GACTGAAACCAGTGAACCTACAAGGACTGAAACTAGTGAACCTACAAGGAATGGTCAGGAAGTGCATTATGTTGGAGAGG
TAATCCATCCATTCGATGCTCAGGCTGATGGCGAGCTCAGTATTTCCGTGGGAGATTATGTTGTGGTCCGGCAGGTGGCT
CCCAATGGGTGGTCTGAAGGGGAATGCAAAGGAAAAGCTGGCTGGTTCCCATCTGCCTATGTGGAGCAGAGGGACAAAGC
CCCGGCAAGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis