Browse Element(s) Details


Os.34142.1.S1_at

Description gb:AK072705.1
DB_XREF= gi:32982728
TID=Os.34142.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34142 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0701D05.31 (P0701D05.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023135A18, full insert sequence.
FL= gb:AK072705.1 gb:AK060540.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0736011/11CENP-E like kinetochore protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07310Os.9898.1.S1_at11/111+3443739..3446984integral membrane protein, putative, expressed
LOC_Os01g07320OsAffx.10952.2.S1_s_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.2.S1_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.1.S1_at1/111+3452056..3452861hypothetical protein
LOC_Os01g07330Os.34951.1.S1_at11/111+3453671..3461754expressed protein
LOC_Os01g07330Os.34951.2.S1_x_at4/111+3453671..3461754expressed protein
LOC_Os01g07340Os.34951.2.S1_at9/111+3462436..3464322expressed protein
LOC_Os01g07340Os.34951.2.S1_x_at6/111+3462436..3464322expressed protein
LOC_Os01g07350Os.23703.2.S1_x_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.2.S1_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.1.A1_at10/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07360Os.34142.1.S1_at11/111+3470648..3474136CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07364Os.50345.1.S1_at11/111+3475339..3475780expressed protein
LOC_Os01g07370Os.37822.3.A1_s_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07370Os.37822.1.A1_a_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07376Os.16494.1.S1_at11/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_x_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07382Os.38232.1.S1_at11/111+3490123..3493361expressed protein
LOC_Os01g07390Os.46325.1.A1_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07390OsAffx.10539.1.S1_x_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34142.1.S1_at--957--2131Chr01:3471211..3471235 (25 bp)
ACAGTTCGGTGACAGCTGAGCTGCA
LOC_Os01g07360
Os.34142.1.S1_at--647--1431Chr01:3471069..3471093 (25 bp)
AGAACTGTCACATGCTACCGAGAAG
LOC_Os01g07360
Os.34142.1.S1_at--597--5631Chr01:3471025..3471049 (25 bp)
GACACGAGGCTGAGATTCTTGCATT
LOC_Os01g07360
Os.34142.1.S1_at--974--2251Chr01:3470936..3470960 (25 bp)
AAATCATGGTTTGCTGACCTAGAGC
LOC_Os01g07360
Os.34142.1.S1_at--60--3091Chr01:3470808..3470832 (25 bp)
AATACACCATGATACACACTTGAGA
LOC_Os01g07360
Os.34142.1.S1_at--323--5971Chr01:3470787..3470811 (25 bp)
GAGAAGTCCTACCATGCATCAGCAT
LOC_Os01g07360
Os.34142.1.S1_at--88--3611Chr01:3470765..3470789 (25 bp)
CATTGTACTTTTCCTGTCTGATTCT
LOC_Os01g07360
Os.34142.1.S1_at--580--3872Chr10:20353690..20353964 (25 bp)
CTGATTCTTTTCCTTGCTGAGGCGA
NONE
Os.34142.1.S1_at--711--8871Chr01:3470713..3470737 (25 bp)
TGATGTGCTGATTGCCTGCGAGTCT
LOC_Os01g07360
Os.34142.1.S1_at--633--3831Chr01:3470698..3470722 (25 bp)
CTGCGAGTCTTTTGCGCGGAACGTA
LOC_Os01g07360
Os.34142.1.S1_at--157--4671Chr01:3470683..3470707 (25 bp)
GCGGAACGTATTTCCCTCGGCAATA
LOC_Os01g07360
Target Sequence 
ACAGTTCGGTGACAGCTGAGCTGCAAGAAACGATTGAAAGCATCAGGATCAAACTTGAAGAAGTTTCTGAGGAGAAATTA
CTTGTTGAGAACAAGTTTAAGCAGCTGGAGGAAGCAAACTCTGAAGCTGAAAAGTACAACCAAGAACTGTCACATGCTAC
CGAGAAGCTTTCAGAGGAGAAGTTCAGACACGAGGCTGAGATTCTTGCATTGAATCAGGCCATTGAAAATCTGAAATCCA
AACTGGAGAGCATTGCTAAGGAGAAATCGTTGCTTAAATCATGGTTTGCTGACCTAGAGCAAGTCGTGGAGCGAGGAAGG
AGAATTTTCCCCGAATAGCCGGAATTCCGTCAGAAAAAATCATAGCTTGCATTTAGCGAATTAGAACTTTTTTTTCTTCT
TCTAATACACCATGATACACACTTGAGAAGTCCTACCATGCATCAGCATTGTACTTTTCCTGTCTGATTCTTTTCCTTGC
TGAGGCGATGCATGGTGGTGATGTGCTGATTGCCTGCGAGTCTTTTGCGCGGAACGTATTTCCCTCGGCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis