Browse Element(s) Details


Os.34200.1.S1_x_at

Description gb:NM_189050.1
DB_XREF= gi:34905183
GEN=P0498E12.10
TID=Os.34200.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0498E12.10 (P0498E12.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0498E12.10 (P0498E12.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g062106/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06160Os.40855.2.S1_x_at3/118+3394501..3395316hypothetical protein
LOC_Os08g06170Os.32498.1.S1_at11/118+3401932..3403624Reticuline oxidase precursor, putative, expressed
LOC_Os08g06180OsAffx.16849.1.S1_at11/118+3405986..3407050Reticuline oxidase precursor, putative
LOC_Os08g06190OsAffx.21988.1.S1_at11/118+3409139..3410827Reticuline oxidase precursor, putative, expressed
LOC_Os08g06200Os.33271.1.S1_a_at11/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06200Os.33271.2.S1_x_at10/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06200Os.26733.3.S1_x_at1/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06210Os.53407.1.S1_x_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.53407.1.S1_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.34200.1.S1_x_at6/118+3419392..3421715expressed protein
LOC_Os08g06210Os.7750.1.S1_at1/118+3419392..3421715expressed protein
LOC_Os08g06220Os.27552.2.S1_at11/118+3424561..3425998hypothetical protein
LOC_Os08g06230Os.27552.1.S1_a_at11/118+3425810..3431881Nucleolar GTP-binding protein 1 containing protein, expressed
LOC_Os08g06240Os.11238.1.S1_at11/118+3432104..3435526Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g06250Os.7243.1.S1_s_at11/118+3437118..3440602GMFP4, putative, expressed
LOC_Os08g06260OsAffx.16851.1.S1_x_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06260OsAffx.16851.1.S1_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06270OsAffx.21987.1.S1_x_at11/118+3443989..3444219hypothetical protein
LOC_Os08g06270OsAffx.21987.1.S1_at11/118+3443989..3444219hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34200.1.S1_x_at--877--1513Chr09:2879422..2879448 (24 bp)
AGCAGGCGTCGGACTCCCACTTTCA
NONE
Os.34200.1.S1_x_at--1149--10311Chr08:3419619..3419643 (25 bp)
TTTCAGCCGCCCATGATGAACTGGA
LOC_Os08g06210
Os.34200.1.S1_x_at--605--1671Chr08:3419623..3419647 (25 bp)
AGCCGCCCATGATGAACTGGATCAA
LOC_Os08g06210
Os.34200.1.S1_x_at--676--1951NONE
ACTGGATCAACGGAATGGTCGGATT
NONE
Os.34200.1.S1_x_at--425--2971Chr08:3421356..3421380 (25 bp)
AATGGTCGGATTGTGCATTGCCTCC
LOC_Os08g06210
Os.34200.1.S1_x_at--416--9191Chr08:3421423..3421447 (25 bp)
TGCCTGGGCCTGCTTCTGTGCCTCG
LOC_Os08g06210
Os.34200.1.S1_x_at--579--10671Chr08:3421450..3421474 (25 bp)
TTCCATGCCGGTATCGCGCTCGTCA
LOC_Os08g06210
Os.34200.1.S1_x_at--187--8931NONE
TGACGCCGGCCGAGGGTACAAGCTA
NONE
Os.34200.1.S1_x_at--909--4471Chr08:3421498..3422011 (25 bp)
GCCGGCCGAGGGTACAAGCTAAGAT
NONE
Os.34200.1.S1_x_at--833--7031Chr08:3421998..3422022 (25 bp)
GTACAAGCTAAGATGCACACGATCA
NONE
Os.34200.1.S1_x_at--800--2791Chr08:3422007..3422031 (25 bp)
AAGATGCACACGATCACACTACCCA
NONE
Target Sequence 
AGCAGGCGTCGGACTCCCACTTTCAGCCGCCCATGATGAACTGGATCAACGGAATGGTCGGATTGTGCATTGCCTCCGCC
GCCGTCGCCGTCGCGGCGGAGTTGTCTCGGGAGCAGGCGTGCCTGGGCCTGCTTCTGTGCCTCGCCTTCCATGCCGGTAT
CGCGCTCGTCATCCGCGCCGCCGCCGCCCCTGACGCCGGCCGAGGGTACAAGCTAAGATGCACACGATCACACTACCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34200.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis