Browse Element(s) Details


Os.34202.1.S1_at

Description gb:AK072471.1
DB_XREF= gi:32982494
TID=Os.34202.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34202 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023116G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023116G18, full insert sequence.
FL= gb:AK063335.1 gb:AK072471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4715011/11DNA topoisomerase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47090Os.56367.1.A1_at11/112+28743728..28747223POT family protein, expressed
LOC_Os02g47100OsAffx.24760.1.S1_at11/112+28747508..28748065hypothetical protein
LOC_Os02g47110Os.8808.1.S1_at11/112+28749301..28752750ADP-ribosylation factor, putative, expressed
LOC_Os02g47120OsAffx.24761.1.S1_at11/112+28754076..28761416RelA/SpoT containing protein, expressed
LOC_Os02g47130Os.18563.1.S1_x_at11/112+28762916..28766231expressed protein
LOC_Os02g47140Os.11528.1.S1_at11/112+28767053..2876825260S ribosomal protein L12, putative, expressed
LOC_Os02g47150Os.34202.1.S1_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47150Os.34202.1.S2_at11/112+28771504..28778718DNA topoisomerase 2, putative, expressed
LOC_Os02g47160Os.52882.2.S1_at1/112+28783401..28789056Bromodomain associated family protein, expressed
LOC_Os02g47170Os.21365.1.S1_at11/112+28789714..28794814expressed protein
LOC_Os02g47180Os.26575.1.S1_at8/112+28797042..28800123Cell division cycle protein 20 homolog, putative, expressed
LOC_Os02g47190Os.24699.1.S1_at11/112+28803051..28806106Calcium-dependent protein kinase substrate protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006259biological_processDNA metabolism
GO:0006265biological_processDNA topological change
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003824molecular_functioncatalytic activity
GO:0003918molecular_functionDNA topoisomerase (ATP-hydrolyzing) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34202.1.S1_at--985--331Chr02:28774954..28774978 (25 bp)
ATAACATAAACCTCTTGCAGCCCAA
LOC_Os02g47150
Os.34202.1.S1_at--658--8711Chr02:28774748..28774772 (25 bp)
TGTCGCCTATCACTCGTTCAATTTT
LOC_Os02g47150
Os.34202.1.S1_at--558--5771Chr02:28774713..28774737 (25 bp)
GACGATATTCTTCTTAACTACTTGG
LOC_Os02g47150
Os.34202.1.S1_at--578--3151Chr02:28774582..28774696 (25 bp)
AATTGAACCCACCTGGTATGTGCCA
LOC_Os02g47150
Os.34202.1.S1_at--836--10111Chr02:28774566..28774590 (25 bp)
TATGTGCCAATCCTGCCCATGGTTT
LOC_Os02g47150
Os.34202.1.S1_at--311--8051Chr02:28774508..28774532 (25 bp)
GGAGCACCTTTATCCCAAACTATAA
LOC_Os02g47150
Os.34202.1.S1_at--465--5871Chr02:28774440..28774464 (25 bp)
GAGCCTGTTGAACCAATGGACCCAT
LOC_Os02g47150
Os.34202.1.S1_at--321--7691Chr02:28774265..28774289 (25 bp)
GGGTGGTGTCAGCTATACTGTCACT
LOC_Os02g47150
Os.34202.1.S1_at--194--6171Chr02:28774231..28774255 (25 bp)
GAGGTTGTTGATGACACTACGCTGA
LOC_Os02g47150
Os.34202.1.S1_at--613--5211Chr02:28774206..28774230 (25 bp)
GAATTACTGAGCTACCAATCCGTCG
LOC_Os02g47150
Os.34202.1.S1_at--915--551Chr02:28774189..28774213 (25 bp)
ATCCGTCGCTGGTCTCAGGATTACA
LOC_Os02g47150
Target Sequence 
ATAACATAAACCTCTTGCAGCCCAATGGTCAATTTGGCACCAGAGATCAGGGAGGGCAAAGATGCTGCTAGTGCTAGGTA
CATCTTCACCCTGTTGTCGCCTATCACTCGTTCAATTTTCCCTAAGGATGACGATATTCTTCTTAACTACTTGGATGAAG
ATGGACAGTCAATTGAACCCACCTGGTATGTGCCAATCCTGCCCATGGTTTTGGTAAATGGAAGTGAAGGCATTGGCACT
GGATGGAGCACCTTTATCCCAAACTATAATCCAAGAGATATTGTTGCTAATCTAAGACGGTTGCTAAATGATGAGCCTGT
TGAACCAATGGACCCATGGTATAGGGGGTTCAAGGGCTCTATTCAGAAGACAGGCACAAAAGCGGGTGGTGTCAGCTATA
CTGTCACTGGTATTATTGAGGTTGTTGATGACACTACGCTGAGAATTACTGAGCTACCAATCCGTCGCTGGTCTCAGGAT
TACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis