Browse Element(s) Details


Os.34507.1.A1_at

Description gb:AK071133.1
DB_XREF= gi:32981156
TID=Os.34507.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023076B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023076B10, full insert sequence.
FL= gb:AK071133.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0877011/11YGGT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08710Os.6038.1.S1_at11/117+4481747..4483068linker histone H1 and H5 family protein, expressed
LOC_Os07g08729Os.51984.1.S1_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729Os.53781.1.S1_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729Os.51984.1.S2_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729OsAffx.31822.1.A1_at6/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08750Os.9515.1.S1_x_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08750Os.9515.1.S1_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08750Os.9515.3.S1_x_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08760Os.22262.3.S1_a_at11/117+4501670..4505973Nodule membrane protein, putative, expressed
LOC_Os07g08770Os.34507.1.A1_at11/117+4507452..4512085YGGT family protein, expressed
LOC_Os07g08780OsAffx.28351.1.S1_at11/117+4517705..4517983hypothetical protein
LOC_Os07g08790Os.7656.1.S1_at11/117+4529078..4535080Targeting protein for Xklp2 containing protein, expressed
LOC_Os07g08790OsAffx.28847.1.S1_at1/117+4529078..4535080Targeting protein for Xklp2 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34507.1.A1_at--10--4131Chr07:4511487..4511511 (25 bp)
CGCGTTCATGGCCATTGACATCATC
LOC_Os07g08770
Os.34507.1.A1_at--465--4991Chr07:4511437..4511461 (25 bp)
GCATGTGATTGCTCCCGGTGGTTAT
LOC_Os07g08770
Os.34507.1.A1_at--195--8251Chr07:4507830..4507854 (25 bp)
GGCACAGGCTATTTTCGGTCAATCA
LOC_Os07g08770
Os.34507.1.A1_at--426--2871Chr07:4507685..4507709 (25 bp)
AAGTGTAGCTCTTCTATGTATGGCA
LOC_Os07g08770
Os.34507.1.A1_at--349--6931Chr07:4507668..4507692 (25 bp)
GTATGGCACTCGAGGATTGTACAAG
LOC_Os07g08770
Os.34507.1.A1_at--313--7931Chr07:4507584..4507608 (25 bp)
GGATTGGCAGTACATCCTGCACATG
LOC_Os07g08770
Os.34507.1.A1_at--135--6911Chr07:4507535..4507559 (25 bp)
GTATCTTAAGCGTCTAGGCTCATGT
LOC_Os07g08770
Os.34507.1.A1_at--1031--4751Chr07:4507518..4507542 (25 bp)
GCTCATGTTCCTCAACGGTTTGTGA
LOC_Os07g08770
Os.34507.1.A1_at--162--3971Chr07:4507503..4507527 (25 bp)
CGGTTTGTGACAATTCTTCTGGAAT
LOC_Os07g08770
Os.34507.1.A1_at--569--8211Chr07:4507483..4507507 (25 bp)
GGAATCTCAATTAACACAGGCACGA
LOC_Os07g08770
Os.34507.1.A1_at--435--3491Chr07:4507467..4507491 (25 bp)
CAGGCACGAGCTTATATATTCATAT
LOC_Os07g08770
Target Sequence 
CGCGTTCATGGCCATTGACATCATCATCATGATCCTTCGCCCGCAGCCACGCATGTGATTGCTCCCGGTGGTTATGGGAT
TGGAGGATGCTGGTTGGTAAATTAGGTTTACTATCGGGGCACAGGCTATTTTCGGTCAATCAACAAGGGATGGTNCTGCT
GAATTTTGCAAGACAAGAAATGGTTGGTTGAGTAAAGTNGCAAAGCCAATATANTTCTTCTAAAGGTAGCTCAATTTGAG
TAATTTCGAGAAGTTTGTTTTCAAGTGTAGCTCTTCTATGTATGGCACTCGAGGATTGTACAAGTAGTATATGTGCTAGC
TACATTTTTTTTTTGTTTTCTTTGCAAATNTTGCTCTCTGCTCGGATTGGCAGTACATCCTGCACATGCNTTTAATGTGA
TTTCAAATTATTGTATCTTAAGCGTCTAGGCTCATGTTCCTCAACGGTTTGTGACAATTCTTCTGGAATCTCAATTAACA
CAGGCACGAGCTTATATATTCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34507.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis