Browse Element(s) Details


Os.35025.1.S1_at

Description gb:AK069241.1
DB_XREF= gi:32979265
TID=Os.35025.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35025 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0490D09.21 (P0490D09.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010E17, full insert sequence.
FL= gb:AK069241.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5676411/11H1flk, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56710OsAffx.2345.1.S1_at11/111+33049553..33051157F-box domain containing protein
LOC_Os01g56710Os.47942.1.A1_at9/111+33049553..33051157F-box domain containing protein
LOC_Os01g56720OsAffx.11628.1.S1_x_at1/111+33053494..33054293hypothetical protein
LOC_Os01g56730Os.50262.1.S1_at11/111+33062208..33066679expressed protein
LOC_Os01g56730OsAffx.23811.1.S1_x_at11/111+33062208..33066679expressed protein
LOC_Os01g56740Os.11360.1.S1_at11/111+33066811..33068445F-box domain containing protein, expressed
LOC_Os01g56750Os.11360.1.S1_at1/111+33071865..33073157F-box domain containing protein
LOC_Os01g56764Os.35025.1.S1_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764Os.35025.2.S1_x_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.32213.1.A1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.23640.2.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.1072.1.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56780Os.11673.2.S1_x_at11/111+33085980..33091601Plus-3 domain containing protein, expressed
LOC_Os01g56790Os.8434.1.S1_at11/111+33095466..33100129expressed protein
LOC_Os01g56790Os.8434.2.S1_x_at11/111+33095466..33100129expressed protein
LOC_Os01g56800Os.23677.1.S1_at11/111+33100413..33110419MATH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35025.1.S1_at--80--8311Chr01:33074874..33074898 (25 bp)
GGCTATGTACCGATGCAGATTTGTT
LOC_Os01g56764
Os.35025.1.S1_at--669--3431Chr01:33074859..33074883 (25 bp)
CAGATTTGTTGGTTCGTTCGTTCAC
LOC_Os01g56764
Os.35025.1.S1_at--682--511Chr01:33074818..33074842 (25 bp)
ATCGTACTATACGTGTCGTGGTGAC
LOC_Os01g56764
Os.35025.1.S1_at--1097--7751Chr01:33074781..33074805 (25 bp)
GGTGATCTCTTTGTTTTTCCGTACA
LOC_Os01g56764
Os.35025.1.S1_at--727--7031Chr01:33074761..33074785 (25 bp)
GTACACCAACTCTACTGTTTGATGA
LOC_Os01g56764
Os.35025.1.S1_at--850--5731Chr01:33074729..33074753 (25 bp)
GACGTTGACTAGTCGACCGATGCCA
LOC_Os01g56764
Os.35025.1.S1_at--39--551Chr01:33074705..33074729 (25 bp)
ATCCGTCGGCGATGGACTTTTCGGG
LOC_Os01g56764
Os.35025.1.S1_at--551--10391Chr01:33074688..33074712 (25 bp)
TTTTCGGGAATCGTGACATCTGTCA
LOC_Os01g56764
Os.35025.1.S1_at--108--1831Chr01:33074619..33074643 (25 bp)
ACGCTTAGGGCCATCTTCCTTGAAG
LOC_Os01g56764
Os.35025.1.S1_at--386--8411Chr01:33074565..33074589 (25 bp)
GGCCCGAGTACAGCGCTGCAAGAGA
LOC_Os01g56764
Os.35025.1.S1_at--836--10611Chr01:33074517..33074541 (25 bp)
TTCGGCCCTGTTTCGCTATTTGAAA
LOC_Os01g56764
Target Sequence 
GGCTATGTACCGATGCAGATTTGTTGGTTCGTTCGTTCACGTTCGCTCACGACACGATCGTACTATACGTGTCGTGGTGA
CGTAGTAGGTAGGGGTGATCTCTTTGTTTTTCCGTACACCAACTCTACTGTTTGATGATGGTATCGACGTTGACTAGTCG
ACCGATGCCATCCGTCGGCGATGGACTTTTCGGGAATCGTGACATCTGTCACGTGCTGATGCGCTGATGGGGCCATCTTA
CACAGGCAGCCCTCGACGCTTAGGGCCATCTTCCTTGAAGAGGTTAGAAACGTATTAGGCCTGAAAAGGGGCCCGAGTAC
AGCGCTGCAAGAGAAAAGAAGGTAGCAGCAACAGCATTTCGGCCCTGTTTCGCTATTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis