Browse Element(s) Details


Os.35230.1.S1_at

Description gb:AK068422.1
DB_XREF= gi:32978440
TID=Os.35230.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0083M16.9 (OSJNBa0083M16.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151G18, full insert sequence.
FL= gb:AK068422.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g041309/11peptidyl-tRNA hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04110Os.10066.2.S1_at5/111+1786432..1788237expressed protein
LOC_Os01g04120Os.45427.1.A1_at11/111+1798832..1803069expressed protein
LOC_Os01g04120Os.23841.1.A1_at11/111+1798832..1803069expressed protein
LOC_Os01g04130Os.35230.1.S1_at9/111+1809784..1814403peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g04130OsAffx.1926.1.S1_at9/111+1809784..1814403peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g04140Os.45976.1.S1_x_at4/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04140Os.45976.1.S1_at2/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04150Os.46306.1.S1_x_at6/111+1822238..1826175transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04160Os.29823.2.S1_x_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.3.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.1.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04170Os.37152.1.S1_at11/111+1834975..1835996expressed protein
LOC_Os01g04180OsAffx.23106.1.S1_at10/111+1836254..1838536hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0004045molecular_functionaminoacyl-tRNA hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35230.1.S1_at--731--4431Chr01:1811082..1811429 (25 bp)
GCCATAATGGCCTGCAGAACGTAAT
LOC_Os01g04130
Os.35230.1.S1_at--38--5271Chr01:1811056..1811080 (25 bp)
GAATGTTTGGACAGTTCCCGTGAAC
LOC_Os01g04130
Os.35230.1.S1_at--228--5491NONE
GAACTTCCTCGTTTATCTATAGGCA
NONE
Os.35230.1.S1_at--987--11Chr01:1810934..1810958 (25 bp)
ATTGGTAGCCCACCCGGCAAAATGG
LOC_Os01g04130
Os.35230.1.S1_at--1067--9631NONE
TCAGTTCAGAGGAACGGCTGCAGAT
NONE
Os.35230.1.S1_at--863--5031Chr01:1810238..1810260 (23 bp)
GCAGATTGACACTGCTTTGGAGCAA
LOC_Os01g04130
Os.35230.1.S1_at--181--6351Chr01:1810207..1810231 (25 bp)
GATGCTGTGAGAACTCTTGTGTTGA
LOC_Os01g04130
Os.35230.1.S1_at--764--5331Chr01:1810142..1810166 (25 bp)
GAAGTACAAGTTCCACAGTGTTTGA
LOC_Os01g04130
Os.35230.1.S1_at--68--7951Chr01:1810100..1810124 (25 bp)
GGATATACTTGCTGAGGACGCATAA
LOC_Os01g04130
Os.35230.1.S1_at--55--251Chr01:1809841..1809865 (25 bp)
ATATACAATACACCACCTCTACACT
LOC_Os01g04130
Os.35230.1.S1_at--602--3291Chr01:1809820..1809844 (25 bp)
CACTAGCTTTATTACACTAACCCCA
LOC_Os01g04130
Target Sequence 
GCCATAATGGCCTGCAGAACGTAATGGAATGTTTGGACAGTTCCCGTGAACTTCCTCGTTTATCTATAGGCATTGGTAGC
CCACCCGGCAAAATGGACANGCGTGCTTTTCTTCTGCAGAAGTTCAGTTCAGAGGAACGGCTGCAGATTGACACTGCTTT
GGAGCAAGGGGTGGATGCTGTGAGAACTCTTGTGTTGAAGGGTTTTAGTGGAAGTATTGAGAGATTCAATCTGGTTCAGA
AGTACAAGTTCCACAGTGTTTGAGAATTATTAAGAGGCTTGGATATACTTGCTGAGGACGCATAAATACGCATCATCAAT
ATCATTGGAAGTGTNGGACGTGGTACTTTGCACAATCTACGTAAGTGCACTAAGTNGCTNCTGCAGTATCCTATAATNTT
GAGGATGCTAAGAAACTTGCAGGGTGTATATAGGTAGAGTACTTTTGCATTNNTTCCTTAGAGCAANTNTTCATTAGAGA
GGTAGTNGTGACCNCTAATTTTGTTCATATGTAAGCTACTTATTAAGTATAAGAGGTAGCATATACAATACACCACCTCT
ACACTAGCTTTATTACACTAACCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis