Browse Element(s) Details


Os.35253.1.S1_at

Description gb:AK068307.1
DB_XREF= gi:32978325
TID=Os.35253.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like protein kinase (P0483E09.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013136I11, full insert sequence.
FL= gb:AK068307.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0382011/11lectin receptor kinase 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03770Os.2254.1.S1_at11/117+1564387..1570486Homeobox protein rough sheath 1, putative, expressed
LOC_Os07g03770Os.44546.1.A1_x_at10/117+1564387..1570486Homeobox protein rough sheath 1, putative, expressed
LOC_Os07g03770Os.44546.1.A1_at8/117+1564387..1570486Homeobox protein rough sheath 1, putative, expressed
LOC_Os07g03780OsAffx.28251.1.S1_at11/117+1573621..1576914lectin receptor kinase 7, putative
LOC_Os07g03790OsAffx.28252.1.S1_at11/117+1581752..1583930lectin receptor kinase 7, putative, expressed
LOC_Os07g03810Os.34827.1.S1_at11/117+1589211..1591595lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.35253.1.S1_at11/117+1593659..1595913lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.46721.1.S1_x_at1/117+1593659..1595913lectin receptor kinase 7, putative, expressed
LOC_Os07g03830Os.44541.1.A1_at11/117+1598169..1600184lectin receptor kinase 7, putative
LOC_Os07g03840Os.11936.1.S1_at11/117+1601323..1603677Protein kinase domain containing protein, expressed
LOC_Os07g03850Os.20817.5.A1_at11/117+1605113..1607113lectin protein kinase, putative, expressed
LOC_Os07g03860Os.23507.1.A1_at10/117+1608526..1610723Protein kinase domain containing protein, expressed
LOC_Os07g03870Os.20817.1.S1_at11/117+1611157..1614544lectin receptor kinase 7, putative, expressed
LOC_Os07g03870Os.20817.1.S2_at11/117+1611157..1614544lectin receptor kinase 7, putative, expressed
LOC_Os07g03880OsAffx.16071.1.S1_at11/117+1616813..1618891lectin receptor kinase 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35253.1.S1_at--728--8091Chr07:1594179..1594203 (25 bp)
GGACGAAGACCTATCTACCATGACT
LOC_Os07g03820
Os.35253.1.S1_at--163--8251Chr07:1594149..1594173 (25 bp)
GGCACCCAGGTTATGCTGGTTGACT
LOC_Os07g03820
Os.35253.1.S1_at--299--5631Chr07:1594089..1594113 (25 bp)
GACACGGTTGATCTGAAGCTCCATG
LOC_Os07g03820
Os.35253.1.S1_at--937--5391Chr07:1594075..1594099 (25 bp)
GAAGCTCCATGGTGAGTTCGACGTT
LOC_Os07g03820
Os.35253.1.S1_at--933--4611Chr07:1594049..1594073 (25 bp)
GCGAGGCTTGCCTGGTGCTCAAGTT
LOC_Os07g03820
Os.35253.1.S1_at--232--6751Chr07:1594003..1594027 (25 bp)
GTTCATCAACGCGAGACCAGATATG
LOC_Os07g03820
Os.35253.1.S1_at--387--4751Chr07:1593934..1593958 (25 bp)
GCTGATGCCAACCAGCATGAGCTTT
LOC_Os07g03820
Os.35253.1.S1_at--880--8911Chr07:1593917..1593941 (25 bp)
TGAGCTTTCACATGCTTGCACTGAT
LOC_Os07g03820
Os.35253.1.S1_at--904--4851Chr07:1593822..1593846 (25 bp)
GCTACCTCTAGCCTCTTGGAAGAAG
LOC_Os07g03820
Os.35253.1.S1_at--129--1351Chr07:1593793..1593817 (25 bp)
AGAGAACCATGCCTGTTTCCATTTG
LOC_Os07g03820
Os.35253.1.S1_at--440--2831Chr07:1593664..1593688 (25 bp)
AAGTATTTTGGATCCTCTCAGTTAG
LOC_Os07g03820
Target Sequence 
GGACGAAGACCTATCTACCATGACTCCCATGGCACCCAGGTTATGCTGGTTGACTGGGTGTTGGATCATTGGCACAAACA
ATCTCTTGTTGACACGGTTGATCTGAAGCTCCATGGTGAGTTCGACGTTGGCGAGGCTTGCCTGGTGCTCAAGTTGGGGC
TCTTGTGCTCACACCCGTTCATCAACGCGAGACCAGATATGCGACGAGTGATGCAGTATCTGAAGAGAGAGGTGGCTCTG
CCTGAGCTGATGCCAACCAGCATGAGCTTTCACATGCTTGCACTGATGCAGAACGACGGGTTCGACTCGTATGTTCAGTC
ATATCCTTCTTCAAATTCAAAGGGAAACATCAGCACAGCTACCTCTAGCCTCTTGGAAGAAGGATAAGAGAACCATGCCT
GTTTCCATTTGGTTAATTAAATCTTTATTATGTTAAAAAAATGCAATTGGGATTACAAGTTCTAACGACTAGTTAATAAT
TAGGCTGATTGTGTATATGTAATTTTGTGATAGAAAAGTATTTTGGATCCTCTCAGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis