Browse Element(s) Details


Os.35362.1.S1_at

Description gb:AK067835.1
DB_XREF= gi:32977853
TID=Os.35362.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35362 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST D48384(S14556)~unknown protein (OSJNBa0077F02.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121M11, full insert sequence.
FL= gb:AK067835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2316911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23110Os.31900.1.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_x_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23120Os.32488.1.S1_at11/117+13035830..13036946expressed protein
LOC_Os07g23130OsAffx.16373.1.S1_at11/117+13039086..13040891hypothetical protein
LOC_Os07g23140OsAffx.22169.1.S1_at11/117+13047554..13047793hypothetical protein
LOC_Os07g23150Os.37141.1.S1_at11/117+13051277..13053598Transferase family protein, expressed
LOC_Os07g23169Os.35362.1.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169Os.41695.15.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16375.2.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_at9/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.27699.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.5264.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23190OsAffx.16377.1.S1_x_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23190OsAffx.16377.1.S1_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23200Os.15319.1.S1_at10/117+13072746..13076810F-actin capping protein alpha subunit, putative, expressed
LOC_Os07g23210Os.53746.1.S1_x_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23210Os.52686.1.S1_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23220NANA7+13086472..13091264retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35362.1.S1_at--386--10511Chr07:13063322..13063346 (25 bp)
TTCACATTATCAGCCATACCTTTTG
LOC_Os07g23169
Os.35362.1.S1_at--388--3331Chr07:13063282..13063306 (25 bp)
CACTAGAGCGTTGTGTATCTGTTCT
LOC_Os07g23169
Os.35362.1.S1_at--593--7631Chr07:13063157..13063255 (25 bp)
GGGACTACGGACTCTATGACATGAC
LOC_Os07g23169
Os.35362.1.S1_at--399--5611Chr07:13063135..13063159 (25 bp)
GACAATGCTTCGGTTTTTACCTCAC
LOC_Os07g23169
Os.35362.1.S1_at--307--7931Chr07:13063101..13063125 (25 bp)
GGATTCCGGGAATACATGCGCTCAG
LOC_Os07g23169
Os.35362.1.S1_at--185--1811Chr07:13063071..13063095 (25 bp)
ACCCTTTCATACTTCTTCACATTAG
LOC_Os07g23169
Os.35362.1.S1_at--731--1431Chr07:13063036..13063060 (25 bp)
AGAACTCTTTCATGCCTCTGGACTA
LOC_Os07g23169
Os.35362.1.S1_at--977--6491Chr07:13056357..13056381 (25 bp)
GATATGATAACTACCGCCAGTACAT
LOC_Os07g23169
Os.35362.1.S1_at--193--10051Chr07:13056297..13056321 (25 bp)
TAGATCTTGCCGTTTGTTTCCTGTG
LOC_Os07g23169
Os.35362.1.S1_at--881--5571Chr07:13056259..13056283 (25 bp)
GAAATCGTGGCCTGGTAAACTTATT
LOC_Os07g23169
Os.35362.1.S1_at--3--4931Chr07:13056209..13056233 (25 bp)
GCTTGCTGCAGGTAAACTTACTGTT
LOC_Os07g23169
Target Sequence 
TTCACATTATCAGCCATACCTTTTGACAATATGCTAGCTACACTAGAGCGTTGTGTATCTGTTCTAAAACCAGGTGGCCT
TGTTTTGTTTAGGGACTACGGACTCTATGACATGACAATGCTTCGGTTTTTACCTCACCAAAGAGTGGGATTCCGGGAAT
ACATGCGCTCAGATGGCACCCTTTCATACTTCTTCACATTAGATACAGTGAGAGAACTCTTTCATGCCTCTGGACTACTA
GAGTTGGAACTGGGGTATTGTTGTGTCATATCAGTGAATAGAAAAAAGGGGAAGAAGATGCAACGGGTTTGGGTGCATGG
CAAATTTCAAAAACCCTAAAGTTGTTAAGTTGATATGATAACTACCGCCAGTACATGTAGTAATGCTAAGGCAACTTAGA
TTGTAGGGTTTTAGATCTTGCCGTTTGTTTCCTGTGGGCCCTGAGAGGAGAAATCGTGGCCTGGTAAACTTATTGAAATT
GAGACACTGTAACTACAAAGCTTGCTGCAGGTAAACTTACTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis