Browse Element(s) Details


Os.35524.1.S3_at

Description gb:AK067087.1
DB_XREF= gi:32977105
TID=Os.35524.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039A07.29 (P0039A07.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095A19, full insert sequence.
FL= gb:AK064787.1 gb:AK067087.1 gb:AK120109.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6513011/11expressed protein
LOC_Os05g344501/11AS2, putative, expressed
LOC_Os01g249401/11Poly synthetase 2, putative
LOC_Os02g490401/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65090Os.7646.1.S1_a_at11/111+38106361..38109701aminotransferase, classes I and II family protein, expressed
LOC_Os01g65100Os.9321.1.S1_a_at11/111+38117333..38119737POT family protein, expressed
LOC_Os01g65110Os.32686.1.S1_at11/111+38122445..38124590POT family protein, expressed
LOC_Os01g65120OsAffx.9518.1.S1_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.9518.1.S1_x_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.11741.1.S1_x_at1/111+38127805..38129652POT family protein
LOC_Os01g65130Os.35524.1.S3_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S1_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S2_at11/111+38130870..38135049expressed protein
LOC_Os01g65140OsAffx.11741.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140Os.32964.1.S1_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140OsAffx.9518.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65150Os.32964.1.S1_at11/111+38141522..38143624POT family protein, expressed
LOC_Os01g65150OsAffx.9518.1.S1_x_at1/111+38141522..38143624POT family protein, expressed
LOC_Os01g65169Os.53707.1.S1_x_at11/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.23920.1.S1_at3/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.9518.1.S1_x_at1/111+38148133..38153667POT family protein, expressed
LOC_Os01g65190OsAffx.11741.1.S1_x_at11/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.50574.1.S1_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.53707.1.S1_x_at1/111+38155266..38159206POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006471biological_processprotein amino acid ADP-ribosylation
GO:0006857biological_processoligopeptide transport
GO:0009799biological_processdetermination of symmetry
GO:0009954biological_processproximal/distal pattern formation
GO:0010199biological_processorgan boundary specification
GO:0016572biological_processhistone phosphorylation
GO:0048441biological_processpetal development
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005819cellular_componentspindle
GO:0016020cellular_componentmembrane
GO:0003677molecular_functionDNA binding
GO:0003950molecular_functionNAD+ ADP-ribosyltransferase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005215molecular_functiontransporter activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35524.1.S3_at--442--6832Chr01:38134481..38134505 (25 bp)
GTTTCACCTAGTTATCACAATTGTT
LOC_Os01g65130
Os.35524.1.S3_at--187--3171Chr01:38134499..38134523 (25 bp)
AATTGTTTAGCCAACCGCATGCGAC
LOC_Os01g65130
Os.35524.1.S3_at--287--4991Chr01:38134515..38134539 (25 bp)
GCATGCGACCAAACGCTTGTGTAAA
LOC_Os01g65130
Os.35524.1.S3_at--86--42910Chr07:22042264..22042283 (20 bp)
CCTACTTCATCCGTCCTAAAATTAT
NONE
Os.35524.1.S3_at--767--6391Chr01:38134730..38134754 (25 bp)
GATCTAATCTTAGGTTGAGTCCCAT
LOC_Os01g65130
Os.35524.1.S3_at--209--6111Chr01:38134746..38134770 (25 bp)
GAGTCCCATCTGATCTTAGATTGTT
LOC_Os01g65130
Os.35524.1.S3_at--107--9853Chr01:38134829..38134853 (25 bp)
TAAATCTCCTGCTATAGCTGCGCTA
LOC_Os01g65130
Os.35524.1.S3_at--763--4571Chr01:38134848..38134872 (25 bp)
GCGCTATCTCCCACTATAATTGTTT
LOC_Os01g65130
Os.35524.1.S3_at--401--1231Chr01:38134879..38134903 (25 bp)
AGTTCTAGCTATTTGTTCTCATGTA
LOC_Os01g65130
Os.35524.1.S3_at--378--3131Chr01:38134905..38134929 (25 bp)
AATTTAGCCGCTATACCTCCATTTA
LOC_Os01g65130
Os.35524.1.S3_at--1096--9871Chr01:38134918..38134942 (25 bp)
TACCTCCATTTAGCCCACTATAGTT
LOC_Os01g65130
Target Sequence 
GTTTCACCTAGTTATCACAATTGTTTAGCCAACCGCATGCGACCAAACGCTTGTGTAAATGTTGCATTAAAGCAACCACA
TTTGAAAATGTATTTCAACATTTTTTTTAAAAAAAAAAGATTTTCTTATACTATGAATCTATATACAAAGTCGCTGTACC
AAAAGTACCGTGACCTACTTCATCCGTCCTAAAATTATAGCAATTTAGGATGAGATAAAACTTAGTACTATAAATTTGGA
CAGATTGTCCGATCTAATCTTAGGTTGAGTCCCATCTGATCTTAGATTGTTATATTTTGGGACGGAGGAAATAAGTATTA
CTCTAATCAACCCGTAAAAACCAGGGTTTTAAATCTCCTGCTATAGCTGCGCTATCTCCCACTATAATTGTTTGAGAAGA
GTTCTAGCTATTTGTTCTCATGTATAATTTAGCCGCTATACCTCCATTTAGCCCACTATAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35524.1.S3_at     

Putative homologies in rice

Putative homologies in arabidopsis