Browse Element(s) Details


Os.35685.1.S1_at

Description gb:AK066300.1
DB_XREF= gi:32976318
TID=Os.35685.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.35685 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative beta-glucosidase (P0665A11.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060A09, full insert sequence.
FL= gb:AK066300.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5651011/11Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56490Os.2185.1.S1_at11/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56490Os.9363.2.S1_x_at1/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56500OsAffx.23809.3.S1_at11/111+32900735..32902741expressed protein
LOC_Os01g56500OsAffx.23809.1.S1_x_at11/111+32900735..32902741expressed protein
LOC_Os01g56500OsAffx.23809.2.S1_x_at2/111+32900735..32902741expressed protein
LOC_Os01g56510Os.35685.1.S1_at11/111+32907558..32912991Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os01g56520Os.18007.1.S1_s_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56520Os.18007.1.S1_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56530OsAffx.11623.1.S1_s_at11/111+32919844..32920762expressed protein
LOC_Os01g56530OsAffx.11623.1.S1_at9/111+32919844..32920762expressed protein
LOC_Os01g56540OsAffx.11623.1.S1_at2/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56540Os.54138.1.S1_at1/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56550Os.10968.1.S1_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.1.S1_s_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.2.S1_x_at10/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56560Os.45897.1.S1_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560Os.45897.1.S1_s_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560OsAffx.23810.1.S1_at10/111+32935529..32937893aromatic-rich family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35685.1.S1_at--327--2691Chr01:32908238..32908262 (25 bp)
AAGCTCCCACGCACTTGGTTCAAGT
LOC_Os01g56510
Os.35685.1.S1_at--743--8811Chr01:32908212..32908236 (25 bp)
TGTTGACCAGCTGCCCATGAATGTT
LOC_Os01g56510
Os.35685.1.S1_at--497--8611Chr01:32908188..32908212 (25 bp)
TGGTGACCTACACTATGATCCACTC
LOC_Os01g56510
Os.35685.1.S1_at--1025--7671Chr01:32907998..32908021 (24 bp)
GGGTTCTCTGGTGCTGACAGACTGA
LOC_Os01g56510
Os.35685.1.S1_at--570--7071Chr01:32907923..32907947 (25 bp)
GTAATACTGATGCATGCTTCGGGCA
LOC_Os01g56510
Os.35685.1.S1_at--436--1191Chr01:32907880..32907904 (25 bp)
AGTTGCCCTTTCCTAGTCGTAGTAT
LOC_Os01g56510
Os.35685.1.S1_at--225--6931Chr01:32907859..32907883 (25 bp)
GTATGGTTCCACATCAAGTGCTCCA
LOC_Os01g56510
Os.35685.1.S1_at--634--3531Chr01:32907836..32907860 (25 bp)
CATGCCTCCATCGTTATACGTTGTA
LOC_Os01g56510
Os.35685.1.S1_at--165--1291Chr01:32907778..32907802 (25 bp)
AGATGCATTTATCCCTAAAGCTAGG
LOC_Os01g56510
Os.35685.1.S1_at--560--4811Chr01:32907648..32907672 (25 bp)
GCTCTGCAAATACTGATGGGCCTAC
LOC_Os01g56510
Os.35685.1.S1_at--125--10351Chr01:32907615..32907639 (25 bp)
TTTACTCTCCGTACCATGTGACACT
LOC_Os01g56510
Target Sequence 
AAGCTCCCACGCACTTGGTTCAAGTCTGTTGACCAGCTGCCCATGAATGTTGGTGACCTACACTATGATCCACTCTTCCC
TTTTGGTTTTGGTTTGACNATAAATTCATCGCAGCCAGGGTTCTCTGGTGCTGACAGACTGAGAGATAGGAATGGGGGGA
TGNTATACGTTGTGTTGAGTTTGGTACTGTCAGTAATACTGATGCATGCTTCGGGCATAGGTATATTTTAACTCGAGTTG
CCCTTTCCTAGTCGTAGTATGGTTCCACATCAAGTGCTCCATGCCTCCATCGTTATACGTTGTATGTACTAGCTCTATGG
AGATTTTTTGATTGCAAAGATGCATTTATCCCTAAAGCTAGGTGGGTCAGTGGGTGATAAGCAGATTTGTTCTTTCACGG
TTTTACCAAATTATGTGTGGTTATAATAGAGCATTTTTATCTAGGGAGGACAAAGTAGATGGATTATGCTCTGCAAATAC
TGATGGGCCTACAGCACTTCTTTACTCTCCGTACCATGTGACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis