Browse Element(s) Details


Os.35855.1.S1_at

Description gb:AK065512.1
DB_XREF= gi:32975530
TID=Os.35855.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35855 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0498E12.2 (P0498E12.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013032K03, full insert sequence.
FL= gb:AK065512.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0613010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06110Os.10901.1.S1_a_at11/118+3359878..3367064myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os08g06110OsAffx.13369.1.S1_at1/118+3359878..3367064myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os08g06120OsAffx.29062.1.S1_at11/118+3371125..3371988B3 DNA binding domain containing protein
LOC_Os08g06120OsAffx.29062.1.S1_x_at11/118+3371125..3371988B3 DNA binding domain containing protein
LOC_Os08g06130Os.35855.2.S1_x_at11/118+3376195..3380659expressed protein
LOC_Os08g06130Os.35855.1.S1_at10/118+3376195..3380659expressed protein
LOC_Os08g06140Os.8787.1.S1_at11/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.1.S1_a_at11/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.2.S1_x_at8/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.2.S1_at2/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06150Os.40855.5.S1_x_at3/118+3391784..3392917hypothetical protein
LOC_Os08g06150Os.40360.1.S1_x_at2/118+3391784..3392917hypothetical protein
LOC_Os08g06160Os.40855.2.S1_x_at3/118+3394501..3395316hypothetical protein
LOC_Os08g06170Os.32498.1.S1_at11/118+3401932..3403624Reticuline oxidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35855.1.S1_at--289--3491Chr08:3376385..3376409 (25 bp)
CAGGAATTCTGCTCATGGGTTTATT
LOC_Os08g06130
Os.35855.1.S1_at--282--2951Chr08:3376341..3376365 (25 bp)
AAGGCTGAGGATAGCAGGCACTGCT
LOC_Os08g06130
Os.35855.1.S1_at--1058--10011Chr08:3376330..3376354 (25 bp)
TAGCAGGCACTGCTTGGCAAAATGG
LOC_Os08g06130
Os.35855.1.S1_at--188--5151Chr08:3376314..3376338 (25 bp)
GCAAAATGGTGCTTTCCAGCCTCTG
LOC_Os08g06130
Os.35855.1.S1_at--484--8611Chr08:3376308..3376332 (25 bp)
TGGTGCTTTCCAGCCTCTGAAAAAA
LOC_Os08g06130
Os.35855.1.S1_at--1079--2411Chr08:3376287..3376311 (25 bp)
AAAACAGCACCACTTTTATGTATGC
LOC_Os08g06130
Os.35855.1.S1_at--914--6911Chr08:3376268..3376292 (25 bp)
GTATGCATGTCTAATTAGCTTCTTA
LOC_Os08g06130
Os.35855.1.S1_at--591--9791Chr08:3376231..3376255 (25 bp)
TAAGAACTCCTAAGTCCTAACCTAG
LOC_Os08g06130
Os.35855.1.S1_at--940--9771Chr08:3376221..3376245 (25 bp)
TAAGTCCTAACCTAGCTGCACATTT
LOC_Os08g06130
Os.35855.1.S1_at--831--3711Chr08:3376210..3376234 (25 bp)
CTAGCTGCACATTTTGGCCATGGCA
LOC_Os08g06130
Os.35855.1.S1_at--246--8431Chr08:3376195..3376219 (25 bp)
GGCCATGGCAGTGCCAAATTGTCAC
NONE
Target Sequence 
CAGGAATTCTGCTCATGGGTTTATTTTGAGTTTTTTTGTCTGATAAGGCTGAGGATAGCAGGCACTGCTTGGCAAAATGG
TGCTTTCCAGCCTCTGAAAAAACAGCACCACTTTTATGTATGCATGTCTAATTAGCTTCTTATGAACAATTGTATAAGAA
CTCCTAAGTCCTAACCTAGCTGCACATTTTGGCCATGGCAGTGCCAAATTGTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis