Browse Element(s) Details


Os.35957.1.S1_at

Description gb:AK064742.1
DB_XREF= gi:32974760
TID=Os.35957.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) extensin-like protein (P0025H06.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-D10, full insert sequence.
FL= gb:AK064742.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2546011/11leucine-rich repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25450OsAffx.27508.85.S1_s_at10/111+14397151..14413734AIG1 family protein, expressed
LOC_Os01g25450Os.16833.1.S1_x_at4/111+14397151..14413734AIG1 family protein, expressed
LOC_Os01g25460Os.35957.1.S1_at11/111+14420371..14422169leucine-rich repeat family protein, putative, expressed
LOC_Os01g25470OsAffx.2085.1.S1_at11/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25470Os.37971.1.A1_at1/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25484Os.142.2.A1_a_at11/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25484Os.12293.4.S1_x_at6/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25500Os.53710.1.S1_at11/111+14436171..14437040expressed protein
LOC_Os01g25510Os.12293.3.S2_at11/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25510Os.12293.3.S2_x_at11/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25510Os.57437.1.S1_x_at2/111+14442488..14443855Alpha-amylase precursor, putative
LOC_Os01g25520Os.12293.4.S1_x_at10/111+14444842..14447357hypothetical protein
LOC_Os01g25520Os.12293.4.S1_at8/111+14444842..14447357hypothetical protein
LOC_Os01g25520Os.44022.1.S1_x_at1/111+14444842..14447357hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35957.1.S1_at--5--5291Chr01:14420915..14420939 (25 bp)
GAATGTGCCCCGGTCGTGAGCCATC
LOC_Os01g25460
Os.35957.1.S1_at--7--8931Chr01:14420899..14420923 (25 bp)
TGAGCCATCCGGTGGATTGCAGCAA
LOC_Os01g25460
Os.35957.1.S1_at--679--2591Chr01:14420876..14420900 (25 bp)
AAGACCAAGCCCTGTGGATGGCCGG
LOC_Os01g25460
Os.35957.1.S1_at--300--8051Chr01:14420829..14420853 (25 bp)
GGAGAGCTCAAAGCATTCACCGCCG
LOC_Os01g25460
Os.35957.1.S1_at--239--571Chr01:14420606..14420630 (25 bp)
ATCCTCCCGCCAATATTGTCAGCAA
LOC_Os01g25460
Os.35957.1.S1_at--212--4171Chr01:14420566..14420590 (25 bp)
CGCCACCGTTTTTCGAAGGATACTG
LOC_Os01g25460
Os.35957.1.S1_at--111--3531Chr01:14420524..14420548 (25 bp)
CATGAGTGATGTGTTGTTGTCCGAC
LOC_Os01g25460
Os.35957.1.S1_at--884--9791Chr01:14420471..14420495 (25 bp)
TAAGCTCATGCTTTAACCACATTGA
LOC_Os01g25460
Os.35957.1.S1_at--962--10771Chr01:14420450..14420474 (25 bp)
TTGAGGGTGCCCATTTACCTTTCCA
LOC_Os01g25460
Os.35957.1.S1_at--1071--611Chr01:14420419..14420443 (25 bp)
ATGCTGTTTTTGACCTGGTTTCAGG
LOC_Os01g25460
Os.35957.1.S1_at--721--10531Chr01:14420400..14420424 (25 bp)
TTCAGGATTAACTGCTGGCTGGTCT
LOC_Os01g25460
Target Sequence 
GAATGTGCCCCGGTCGTGAGCCATCCGGTGGATTGCAGCAAGACCAAGCCCTGTGGATGGCCGGCGCCGGCGNAGAAGCC
AGCGCCGGAGAGCTCAAAGCATTCACCGCCGCCGCCGCCGCCACCAGCACCGGTACAATCCCCGCCACCACCGGCACCGG
TGGTATCCCCGCCATCGCCAGTGTTCTCTCCACCGCCTGCCTTCTCGCCGCCGCCGCCGCCCAAGACATCTCCTCCACCG
CCTGTCTCCTCGCCGCCGCCACCGCCACCGCCGACTATGTCCCCGCCGCCGCCAATTCAAGAGCCCGTCATCCTCCCGCC
AATATTGTCAGCAAAATACCAATCGCCACCGCCACCGTTTTTCGAAGGATACTGATAATCTAGTTTGAGGCCATGAGTGA
TGTGTTGTTGTCCGACACTAGTACAGAAAACGTCGAATGTAATATAAGCTCATGCTTTAACCACATTGAGGGTGCCCATT
TACCTTTCCATTTTTAATGCTGTTTTTGACCTGGTTTCAGGATTAACTGCTGGCTGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis