Browse Element(s) Details


Os.36185.1.S1_at

Description gb:AK064236.1
DB_XREF= gi:32974254
TID=Os.36185.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0063G05.13 (OSJNBb0063G05.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-H12, full insert sequence.
FL= gb:AK064236.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4771011/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47650Os.45930.1.A1_at7/111+27584296..27593009vacuoleless1, putative, expressed
LOC_Os01g47660Os.9361.1.S1_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47660Os.9361.1.S1_s_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47660OsAffx.23701.1.S1_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47670OsAffx.23702.1.S1_s_at11/111+27596015..27597223expressed protein
LOC_Os01g47670OsAffx.28696.1.S1_x_at1/111+27596015..27597223expressed protein
LOC_Os01g47680OsAffx.11509.1.S1_at11/111+27598232..27600753expressed protein
LOC_Os01g47690Os.8765.1.S1_a_at10/111+27601570..27605404Hydroxyacylglutathione hydrolase 3, mitochondrial precursor, putative, expressed
LOC_Os01g47700NANA1+27608163..27608838expressed protein
LOC_Os01g47710Os.36185.1.S1_at11/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_x_at10/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_at10/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47720OsAffx.21516.2.S1_at11/111+27626870..27627196hypothetical protein
LOC_Os01g47730Os.41776.1.S1_at11/111+27628289..27629770Ras-related protein Rab11B, putative, expressed
LOC_Os01g47740Os.12075.1.S1_a_at11/111+27629959..27639153Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g47740Os.12075.1.S2_a_at10/111+27629959..27639153Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g47750NANA1+27644206..27648558Splicing factor U2AF 23 kDa subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008284biological_processpositive regulation of cell proliferation
GO:0010075biological_processregulation of meristem size
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36185.1.S1_at--913--4972Chr07:20904482..20904506 (25 bp)
GCATGCATCATATTCATACGCTCAT
NONE
Os.36185.1.S1_at--114--2531Chr01:27617624..27617648 (25 bp)
AACTTCTCTTGTAGTGTTGTCCTCA
LOC_Os01g47710
Os.36185.1.S1_at--1112--6611Chr01:27617609..27617633 (25 bp)
GTTGTCCTCAATTTCAGTTTCGTTT
LOC_Os01g47710
Os.36185.1.S1_at--1004--8731Chr01:27617525..27617549 (25 bp)
TGTACTGTACTAGTTTCCTTTAGGG
LOC_Os01g47710
Os.36185.1.S1_at--347--3291Chr01:27617493..27617517 (25 bp)
CAAACCAGCCGTTCTCAAACAAGGG
LOC_Os01g47710
Os.36185.1.S1_at--1120--7171Chr01:27617400..27617424 (25 bp)
GTCTGTACAATCTTATCACTTCAAT
LOC_Os01g47710
Os.36185.1.S1_at--1146--8911Chr01:27617299..27617323 (25 bp)
TGAGCTGTTCTCCATCAGGTCAAAT
LOC_Os01g47710
Os.36185.1.S1_at--306--7011Chr01:27617230..27617254 (25 bp)
GTACTACTGCTATTTCATGGTGATG
LOC_Os01g47710
Os.36185.1.S1_at--905--7611Chr01:27617205..27617229 (25 bp)
GGGAACATCATGTCATCGCATGTAG
LOC_Os01g47710
Os.36185.1.S1_at--685--731Chr01:27617186..27617210 (25 bp)
ATGTAGATGCATTCAGCTCCCACAT
LOC_Os01g47710
Os.36185.1.S1_at--230--3291Chr01:27617138..27617162 (25 bp)
CAAACCCTGGTTTGCATGTGCAACG
LOC_Os01g47710
Target Sequence 
GCATGCATCATATTCATACGCTCATGTTTAAATGGATTAATTAGAAGTGTCACTTCAGGGGAGTCTAACTTCTCTTGTAG
TGTTGTCCTCAATTTCAGTTTCGTTTGGATTTAACTACAAAATGACAAATTTTTTACTGAAAGAAGAATTGTATATGCAT
GAAATTGTACTGTACTAGTTTCCTTTAGGGCCCAATCCAAACCAGCCGTTCTCAAACAAGGGCCCTGTGCCCAGGCATGG
CAATGATAATAAGACAAGTTTAGGCCATGTAAAATCCTTTTCTTTTGTGTGTCTGTACAATCTTATCACTTCAATGCAGA
TAGACTTTCCAGTAAAGATGAAGAAATTTGTCATTTTGTAAGCATGTAGATTTAGACAAGACCAAAATTTGTGAGCTGTT
CTCCATCAGGTCAAATTGAGTAGGTTTCTTGATGGGATGTTACAAATATGCGAACTACTAGTACTACTGCTATTTCATGG
TGATGGGGAACATCATGTCATCGCATGTAGATGCATTCAGCTCCCACATGCTCCCTCCATCCAAAAAAAAGACAAACCCT
GGTTTGCATGTGCAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis