Browse Element(s) Details


Os.36549.1.S1_at

Description gb:AK063135.1
DB_XREF= gi:32973153
TID=Os.36549.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-G01, full insert sequence.
FL= gb:AK063135.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g184502/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18410Os.9858.2.S1_x_at11/111+10343489..10346650hypothetical protein
LOC_Os01g18410Os.9858.1.S1_at3/111+10343489..10346650hypothetical protein
LOC_Os01g18420OsAffx.11096.1.S1_at11/111+10349207..10349929SRF-type transcription factor family protein
LOC_Os01g18440OsAffx.11097.1.S1_at11/111+10363189..10364109SRF-type transcription factor family protein
LOC_Os01g18450Os.36549.1.S1_at2/111+10366840..10367181expressed protein
LOC_Os01g18460OsAffx.11098.1.S1_at10/111+10372711..10373713hypothetical protein
LOC_Os01g18460OsAffx.27834.1.S1_at1/111+10372711..10373713hypothetical protein
LOC_Os01g18470Os.41695.15.S1_s_at11/111+10377726..10384647transposon protein, putative, Mutator sub-class
LOC_Os01g18470Os.41695.5.S1_x_at8/111+10377726..10384647transposon protein, putative, Mutator sub-class
LOC_Os01g18470Os.41695.4.S1_x_at4/111+10377726..10384647transposon protein, putative, Mutator sub-class
LOC_Os01g18470Os.41695.3.S1_x_at3/111+10377726..10384647transposon protein, putative, Mutator sub-class
LOC_Os01g18470Os.41695.2.S1_x_at3/111+10377726..10384647transposon protein, putative, Mutator sub-class
LOC_Os01g18480Os.35344.18.S1_x_at10/111+10386163..10393062transposon protein, putative, Mutator sub-class
LOC_Os01g18480Os.35344.3.S1_x_at7/111+10386163..10393062transposon protein, putative, Mutator sub-class
LOC_Os01g18480OsAffx.22940.5.S1_at5/111+10386163..10393062transposon protein, putative, Mutator sub-class
LOC_Os01g18480OsAffx.22940.5.S1_x_at4/111+10386163..10393062transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36549.1.S1_at--930--5051Chr01:10366972..10367095 (25 bp)
GCAGCAGCCAAACTCCGGGATGATG
LOC_Os01g18450
Os.36549.1.S1_at--463--2231Chr01:10366850..10366874 (25 bp)
ACAAGGCCAGGATCCGTGAGTTCAA
LOC_Os01g18450
Os.36549.1.S1_at--69--6251Chr01:10366798..10366822 (25 bp)
GATGGTCGTTGGTCACCGATCAAAA
NONE
Os.36549.1.S1_at--531--6471Chr01:10366743..10366767 (25 bp)
GATACATCGAGCATGAAACCGGTGT
NONE
Os.36549.1.S1_at--186--7971Chr01:10366609..10366633 (25 bp)
GGATCCAATCGTCATGTCGTCGCGT
NONE
Os.36549.1.S1_at--327--7231Chr01:10366586..10366610 (25 bp)
GTCGCAGTTCTGTGTTTGGTATGTG
NONE
Os.36549.1.S1_at--296--4891Chr01:10366543..10366567 (25 bp)
GCTTTTGGTTGGTAAATCTCTGCTC
NONE
Os.36549.1.S1_at--958--3051Chr01:10366529..10366553 (25 bp)
AATCTCTGCTCGACGGACGATGTGA
NONE
Os.36549.1.S1_at--135--5771Chr01:10366514..10366538 (25 bp)
GACGATGTGAGAATCCCCATTGGCA
NONE
Os.36549.1.S1_at--217--4171Chr01:10366499..10366523 (25 bp)
CCCATTGGCACTCTTTTGGTTGAGG
NONE
Os.36549.1.S1_at--895--4211NONE
CCGCTGGACCTGGAATCTTTATCAT
NONE
Target Sequence 
GCAGCAGCCAAACTCCGGGATGATGGTGCAGCACGTCGTGGTGGACGCCGAGAGATCGAAGCTGCACGGCGAGGTGATGG
CGTGCGCGTACGAGGACGTTCAGGTGATGTGGGATATGCTGGACAAGGCCAGGATCCGTGAGTTCAATAGCAGCTAGCTG
TTAATGCCTTGATGGATGGTCGTTGGTCACCGATCAAAATTATGCTTCTGTTTGATCAAATTTCAAGAGGATACATCGAG
CATGAAACCGGTGTATATATAGCAAGATCGATGGTAATCTCTTCTTGGNCGTNCCGATTGATCGANTCCATNCATTNCGG
GCTNNGTTTNGANNCCTGTCGGTGATGATTNNNNGCTACCTGCGGATCCAATCGTCATGTCGTCGCGTCGCAGTTCTGTG
TTTGGTATGTGCAGTAGAAANGCTAGTATAGCTTTTGGTTGGTAAATCTCTGCTCGACGGACGATGTGAGAATCCCCATT
GGCACTCTTTTGGTTGAGGTGCTGAATTGGAGAGANTGTATATTTTNGTCACCCGCTGGACCTGGAATCTTTATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis