Browse Element(s) Details


Os.36607.1.S1_x_at

Description gb:AK063034.1
DB_XREF= gi:32973052
TID=Os.36607.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome1, At1g09310 (P0022B05.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-C08, full insert sequence.
FL= gb:AK063034.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0288011/11expressed protein
LOC_Os07g026901/11expressed protein
LOC_Os07g029401/11expressed protein
LOC_Os07g029201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02810Os.7637.1.S1_at11/117+1053441..1056428L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os07g02820OsAffx.28240.1.S1_at11/117+1059647..1060707expressed protein
LOC_Os07g02840NANA7+1062506..1064009hypothetical protein
LOC_Os07g02850Os.46022.1.S1_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.46022.1.S1_x_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.23172.1.S1_x_at4/117+1065317..1066167expressed protein
LOC_Os07g02850Os.40003.1.S1_x_at1/117+1065317..1066167expressed protein
LOC_Os07g02860OsAffx.28241.1.S1_at11/117+1067613..1069134hypothetical protein
LOC_Os07g02870OsAffx.5189.1.S1_at11/117+1074925..1075645hypothetical protein
LOC_Os07g02870Os.23172.1.S1_x_at1/117+1074925..1075645hypothetical protein
LOC_Os07g02880Os.36607.1.S1_x_at11/117+1079262..1080033expressed protein
LOC_Os07g02880Os.23172.1.S1_x_at1/117+1079262..1080033expressed protein
LOC_Os07g02890Os.40458.1.S1_at11/117+1081104..1082724F-box domain containing protein, expressed
LOC_Os07g02900Os.23172.1.S1_x_at3/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.46022.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.40003.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02910Os.31486.1.S1_at11/117+1085689..1087509F-box domain containing protein, expressed
LOC_Os07g02920Os.40003.1.S1_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.40003.1.S1_x_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.23172.1.S1_x_at3/117+1087792..1088466expressed protein
LOC_Os07g02920Os.46022.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02920Os.36607.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02930NANA7+1091541..1093053F-box domain containing protein
LOC_Os07g02940Os.23172.1.S1_x_at11/117+1093357..1094206expressed protein
LOC_Os07g02940Os.46022.1.S1_x_at2/117+1093357..1094206expressed protein
LOC_Os07g02940Os.40003.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02940Os.36607.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02950Os.54108.1.S1_at11/117+1094680..1099996expressed protein
LOC_Os07g02960Os.32682.1.S1_at11/117+1100153..1103688expressed protein
LOC_Os07g02960Os.32682.2.S1_x_at11/117+1100153..1103688expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36607.1.S1_x_at--674--2271Chr07:1079827..1079851 (25 bp)
AAATCGAGAGCCACCGCTCTGGTGC
LOC_Os07g02880
Os.36607.1.S1_x_at--289--4131Chr07:1079813..1079837 (25 bp)
CGCTCTGGTGCGGAGATCGTCAATG
LOC_Os07g02880
Os.36607.1.S1_x_at--1012--6393Chr07:24937815..24937837 (22 bp)
GATCGTCAATGGAGATGCCATCTGC
NONE
Os.36607.1.S1_x_at--649--9131Chr07:1079755..1079779 (25 bp)
TGCTGGAAGAACTTGGTCTCCCCAA
LOC_Os07g02880
Os.36607.1.S1_x_at--1055--4011Chr07:1079613..1079637 (25 bp)
CGTCTCCTATGCCAACGAGGTCACG
LOC_Os07g02880
Os.36607.1.S1_x_at--1019--1871Chr07:1079599..1079623 (25 bp)
ACGAGGTCACGGCATTCACTGAGAA
LOC_Os07g02880
Os.36607.1.S1_x_at--729--4812Chr07:1079454..1079478 (25 bp)
GCTCTCTGATACCTTCGATGCTGCC
LOC_Os07g02880
Os.36607.1.S1_x_at--533--4851Chr07:1079390..1079414 (25 bp)
GCTACTGTAAGCTAGAGATGGTGCA
LOC_Os07g02880
Os.36607.1.S1_x_at--878--6251Chr07:1079374..1079398 (25 bp)
GATGGTGCAAATCTGTAATCTTAAT
LOC_Os07g02880
Os.36607.1.S1_x_at--1140--2932Chr07:971739..971763 (25 bp)
AAGGCTTAAAGCCACTATCTTACAT
LOC_Os07g02690
Os.36607.1.S1_x_at--987--9651Chr07:1079318..1079342 (25 bp)
TCACCATGTACTGTTATATAAATCT
LOC_Os07g02880
Target Sequence 
AAATCGAGAGCCACCGCTCTGGTGCGGAGATCGTCAATGGAGATGCCATCTGCAGGAAGAAGTCCATTGAGCTGCTGGAA
GAACTTGGTCTCCCCAAGGGCCTCCTGCCATTGGAGGACATCGAGGAGTTCGGGTACAACAGGGGGACTGGGTTCATGTG
GTTGNTGCAGAAGAAGAAGAAAATTGAGCACACGTTCAAGAAGATCAAGCAGNCCGTCTCCTATGCCAACGAGGTCACGG
CATTCACTGAGAAAGGGAAGCTGAAGAAGATCACCGGAGTGAAGACCAAGGAGCTGCTGCTCTGGCTCAGCGTTGTTGAG
GTCTACATCACCGATGCCTCGCCGGATAAGGTCACCTTCAAGACAGGAACCGGGCTCTCTGATACCTTCGATGCTGCCGC
TTTTGCTCTTGGTGAGTAAGGCTTAAGGAGTCAGTCAGCTACTGTAAGCTAGAGATGGTGCAAATCTGTAATCTTAATTA
TGTAAAAGGCTTAAAGCCACTATCTTACATCACCATGTACTGTTATATAAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36607.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis