Browse Element(s) Details


Os.36802.1.S1_at

Description gb:AK062646.1
DB_XREF= gi:32972664
TID=Os.36802.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 1, T27G7.18 (OSJNBa0036E02.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-E02, full insert sequence.
FL= gb:AK062646.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1747011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17430Os.1236.1.S1_at11/111+10018208..10023767Adaptin N terminal region family protein, expressed
LOC_Os01g17440Os.47130.4.A1_x_at3/111+10025332..10027790retrotransposon protein, putative, unclassified
LOC_Os01g17440Os.27455.2.S1_at1/111+10025332..10027790retrotransposon protein, putative, unclassified
LOC_Os01g17450Os.28943.1.S1_x_at4/111+10028759..10032001retrotransposon protein, putative, unclassified
LOC_Os01g17460NANA1+10032622..10038585retrotransposon protein, putative, unclassified
LOC_Os01g17470Os.36802.1.S1_at11/111+10045051..10047087Plastocyanin-like domain containing protein, expressed
LOC_Os01g17970OsAffx.442.1.S1_x_at4/111+10053714..10054772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g17970OsAffx.30226.2.S1_s_at4/111+10053714..10054772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g17970OsAffx.30226.2.S1_x_at4/111+10053714..10054772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g17970OsAffx.442.1.S1_at2/111+10053714..10054772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g17980OsAffx.23283.1.S1_at11/111+10055409..10056675hypothetical protein
LOC_Os01g17990OsAffx.22267.2.S1_x_at11/111+10058220..10061880transcription elongation factor, putative
LOC_Os01g17990OsAffx.22267.1.S1_at11/111+10058220..10061880transcription elongation factor, putative
LOC_Os01g18000Os.27639.1.S1_x_at9/111+10068189..10073138transposon protein, putative, unclassified
LOC_Os01g18000OsAffx.8980.1.S1_at6/111+10068189..10073138transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36802.1.S1_at--1078--4251Chr01:10045596..10045620 (25 bp)
CCGGAGTTCAGCAAGGACGCCGTCA
LOC_Os01g17470
Os.36802.1.S1_at--901--8191Chr01:10045549..10045573 (25 bp)
GGAAGGGAGCAGCTACTTCTTCTCC
LOC_Os01g17470
Os.36802.1.S1_at--495--4831Chr01:10045538..10045562 (25 bp)
GCTACTTCTTCTCCGGGAACTACGA
LOC_Os01g17470
Os.36802.1.S1_at--44--6431Chr01:10045262..10045286 (25 bp)
GTATAGCCAGGCTCGGGTCCGGTCT
LOC_Os01g17470
Os.36802.1.S1_at--705--9571Chr01:10045214..10045238 (25 bp)
TCTTCGTGGTGCAAGTGTAGTTCAC
LOC_Os01g17470
Os.36802.1.S1_at--922--7431Chr01:10045200..10045224 (25 bp)
GTGTAGTTCACACACATGGGTGCTC
LOC_Os01g17470
Os.36802.1.S1_at--405--7711Chr01:10045183..10045207 (25 bp)
GGGTGCTCACATGGCGCTTGATTAA
LOC_Os01g17470
Os.36802.1.S1_at--589--4931Chr01:10045168..10045192 (25 bp)
GCTTGATTAAGCTTTTGCGCCTGAT
LOC_Os01g17470
Os.36802.1.S1_at--767--10691Chr01:10045154..10045178 (25 bp)
TTGCGCCTGATTTAAGTTATGGGAT
LOC_Os01g17470
Os.36802.1.S1_at--922--6631Chr01:10045078..10045102 (25 bp)
GTTGTACACTATACCACCTGAGATG
LOC_Os01g17470
Os.36802.1.S1_at--1028--8031Chr01:10045054..10045078 (25 bp)
GGAGTATATGATTTGCTTCTTTACG
LOC_Os01g17470
Target Sequence 
CCGGAGTTCAGCAAGGACGCCGTCACCGTCGCCGTGCCGCTGCTCAAGGAAGGGAGCAGCTACTTCTTCTCCGGGAACTA
CGACGGCGAGCAGTGCGAGAGCGGCCAGCGCTTCGCCATCGCCGTCGCCCACGGCCAGGGCCTCCCGCCGGACCTCCGCC
CGCCGGCGGCCGAGGCTCCCGGCCCCTCCTCCTCCGCCGGCGCCGCCGCCGACGCGCCGCCCACCTTCGACTTCAGCCAC
CCCAAGAACGTGTCCAACTCGCCGGCCGACACGTCGACGACCGCGCCGCTGGACGACGCCGACGACGCGCCGACCACCGG
CGGCGCGGGTCGGAGTATAGCCAGGCTCGGGTCCGGTCTGGCGGCGGCGGCGACTCTGCTCTTCTTCGTGGTGCAAGTGT
AGTTCACACACATGGGTGCTCACATGGCGCTTGATTAAGCTTTTGCGCCTGATTTAAGTTATGGGATTTGTTTAATTTGT
TGTAGTTTATTTTTTTGAGCTGTTTGAGTAGGAAGAGTGTTGTACACTATACCACCTGAGATGGAGTATATGATTTGCTT
CTTTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis