Browse Element(s) Details

Os.37090.1.S1_x_at

Description

gb:AK060801.1
DB_XREF= gi:32970819
TID=Os.37090.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37090 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-033-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-033-F05, full insert sequence.
FL= gb:AK060801.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g45650	10/11	MADS-box protein ZMM17, putative, expressed
LOC_Os03g07410	10/11
LOC_Os01g23590	1/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g45610	Os.28031.1.S1_at	11/11	6	+	27613153..27613832	expressed protein
LOC_Os06g45620	OsAffx.5116.2.S1_at	11/11	6	+	27617994..27620708	hypothetical protein
LOC_Os06g45630	Os.56488.1.S1_at	11/11	6	+	27621773..27625273	Leucine Rich Repeat family protein, expressed
LOC_Os06g45630	OsAffx.2759.1.S1_x_at	1/11	6	+	27621773..27625273	Leucine Rich Repeat family protein, expressed
LOC_Os06g45640	Os.24566.1.S1_at	11/11	6	+	27626770..27632039	CCAAT-box binding factor HAP5 homolog, putative, expressed
LOC_Os06g45650	Os.28022.1.S1_s_at	11/11	6	+	27636557..27640580	MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650	Os.37090.1.S1_x_at	10/11	6	+	27636557..27640580	MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650	Os.52495.1.S1_at	9/11	6	+	27636557..27640580	MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650	Os.38268.2.S1_s_at	1/11	6	+	27636557..27640580	MADS-box protein ZMM17, putative, expressed
LOC_Os06g45660	Os.22567.1.S1_at	11/11	6	+	27655876..27658012	14 kDa zinc-binding protein, putative, expressed
LOC_Os06g45670	Os.13875.1.S1_at	11/11	6	+	27658072..27660168	Glycine cleavage system H protein 1, mitochondrial precursor, putative, expressed
LOC_Os06g45680	OsAffx.26553.1.S1_at	11/11	6	+	27661323..27661827	hypothetical protein
LOC_Os06g45680	OsAffx.26553.1.S1_x_at	11/11	6	+	27661323..27661827	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0008360	biological_process	regulation of cell shape
GO:0009908	biological_process	flower development
GO:0009911	biological_process	positive regulation of flower development
GO:0009933	biological_process	meristem organization
GO:0010023	biological_process	proanthocyanidin biosynthesis
GO:0045941	biological_process	positive regulation of transcription
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity
GO:0016563	molecular_function	transcriptional activator activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.37090.1.S1_x_at--602--33	3	Chr06:27639838..27639862 (25 bp)	ATACTTGCTGCCATGATTTCTATCA	LOC_Os06g45650
Os.37090.1.S1_x_at--314--19	3	Chr06:27639853..27639877 (25 bp)	ATTTCTATCACTCATGCACGCATTG	LOC_Os06g45650
Os.37090.1.S1_x_at--937--509	3	Chr06:27639868..27639892 (25 bp)	GCACGCATTGCCCTTGATGATTGTA	LOC_Os06g45650
Os.37090.1.S1_x_at--66--275	1	Chr03:3739954..3739978 (25 bp)	AAGAAAATCCTTGGCGGTTCTGCTT	LOC_Os03g07410
Os.37090.1.S1_x_at--169--549	3	Chr06:27640242..27640266 (25 bp)	GAACTTGCCTTCTTCATGCATCAGA	LOC_Os06g45650
Os.37090.1.S1_x_at--947--995	3	Chr06:27640292..27640316 (25 bp)	TACCCTCTCCAAAATTGAGCTGCTC	LOC_Os06g45650
Os.37090.1.S1_x_at--406--891	3	Chr06:27640307..27640331 (25 bp)	TGAGCTGCTCAGGACTTCGTAGAAA	LOC_Os06g45650
Os.37090.1.S1_x_at--559--741	4	Chr06:27640350..27640374 (25 bp)	GTGATTTATCCATTCTCTTTTACTG	LOC_Os06g45650
Os.37090.1.S1_x_at--296--13	3	Chr06:27640420..27640444 (25 bp)	ATTAAGGCAGCCTCAGCTTTGTGGT	LOC_Os06g45650
Os.37090.1.S1_x_at--125--157	4	Chr06:27640434..27640458 (25 bp)	AGCTTTGTGGTTTGCCAAGCCATGT	LOC_Os06g45650
Os.37090.1.S1_x_at--933--77	3	Chr06:27640530..27640554 (25 bp)	ATGTGTCCTGGAATCGGTTTAGAAC	LOC_Os06g45650

Target Sequence

ATACTTGCTGCCATGATTTCTATCACTCATGCACGCATTGCCCTTGATGATTGTATGCAGTTGGGATATATTGTCATCAA
GCAAGAAAATCCTTGGCGGTTCTGCTTCCTGGAAGCAGTAGGAACAACAAGAGTTACTGAACCAGAAATTGAACTTGCCT
TCTTCATGCATCAGATGAACCATAAAGGGAACAACACTACTACCCTCTCCAAAATTGAGCTGCTCAGGACTTCGTAGAAA
TTTACAGCTTCAGGACATGTGATTTATCCATTCTCTTTTACTGTTTATTCTAAAATGCAAAAAAAAAAAAGAAATTTTGT
TGTAGCTTAGATTAAGGCAGCCTCAGCTTTGTGGTTTGCCAAGCCATGTANTGATATATGAATGTGATACTTTAATTAAN
GTTGAAACGCATGATTATGTATTTGAACTNAATTGACTGAATGTGTCCTGGAATCGGTTTAGAAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis