Browse Element(s) Details


Os.37320.1.S1_at

Description gb:AK059297.1
DB_XREF= gi:32969315
TID=Os.37320.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0043P23.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-E11, full insert sequence.
FL= gb:AK059297.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6295011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62900OsAffx.25801.1.S1_at11/113+35522435..35525874hypothetical protein
LOC_Os03g62910Os.23707.1.S1_at11/113+35528696..35535002expressed protein
LOC_Os03g62910Os.23707.2.S1_at4/113+35528696..35535002expressed protein
LOC_Os03g62920OsAffx.25802.1.S1_at11/113+35539574..35540016hypothetical protein
LOC_Os03g62950Os.37320.2.S1_x_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.1.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.2.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62974OsAffx.10400.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.10400.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974Os.32503.1.S1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.29203.3.A1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g63000Os.20602.2.S1_x_at11/113+35561027..35563200hAT family dimerisation domain containing protein
LOC_Os03g63010Os.25587.2.S1_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.25587.3.S1_x_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.19042.1.S1_at3/113+35564574..35568552Immutans protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37320.1.S1_at--26--7611Chr03:35545826..35545850 (25 bp)
GGGAAGTTCCCATAGGCAGCAACGC
LOC_Os03g62950
Os.37320.1.S1_at--424--5051Chr03:35545811..35545835 (25 bp)
GCAGCAACGCCCATCCTAAGAAGGA
LOC_Os03g62950
Os.37320.1.S1_at--828--9311Chr03:35545766..35545790 (25 bp)
TCCCTTTTTTGTGGCTTGAGAAACA
LOC_Os03g62950
Os.37320.1.S1_at--14--6551Chr03:35545717..35545741 (25 bp)
GATTTTCACCGCAGATTAGTAGCAA
LOC_Os03g62950
Os.37320.1.S1_at--756--8611Chr03:35545670..35545694 (25 bp)
TGGTGACCTTTACTGCTGATTAGCA
LOC_Os03g62950
Os.37320.1.S1_at--678--6551Chr03:35545653..35545677 (25 bp)
GATTAGCACCATTCATAGACTCAAG
LOC_Os03g62950
Os.37320.1.S1_at--491--10251Chr03:35545618..35545642 (25 bp)
TTTGGTGGTTTACTTGAGCATCGGT
LOC_Os03g62950
Os.37320.1.S1_at--876--4971Chr03:35545601..35545625 (25 bp)
GCATCGGTATTTTTGAGAAGCAGCA
LOC_Os03g62950
Os.37320.1.S1_at--763--8891Chr03:35545538..35545562 (25 bp)
TGAGATTGTCACTCCAACTTTCTTG
LOC_Os03g62950
Os.37320.1.S1_at--214--3271Chr03:35545524..35545548 (25 bp)
CAACTTTCTTGTCGGCTCTATCATG
LOC_Os03g62950
Os.37320.1.S1_at--1009--5851Chr03:35545500..35545524 (25 bp)
GAGCCATGAAGTATTTTCTTCCTAA
LOC_Os03g62950
Target Sequence 
GGGAAGTTCCCATAGGCAGCAACGCCCATCCTAAGAAGGAGCAAAGCAAATGTTACAAGTTCCCTTTTTTGTGGCTTGAG
AAACAGCAGGCCAGCAGCAACATTTTGGTGATTTTCACCGCAGATTAGTAGCAATCATAGGCTCAAGTAAGATTTTTGGT
GACCTTTACTGCTGATTAGCACCATTCATAGACTCAAGTAAGTTCTTTTTTGGTGGTTTACTTGAGCATCGGTATTTTTG
AGAAGCAGCAACAATAGGCATAGATCAGATCACTATCATGTGTAGTTCTGAGATTGTCACTCCAACTTTCTTGTCGGCTC
TATCATGAGCCATGAAGTATTTTCTTCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis