Browse Element(s) Details


Os.3754.1.S1_at

Description gb:AK067352.1
DB_XREF= gi:32977370
TID=Os.3754.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.3754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013101L22, full insert sequence.
FL= gb:AK067352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1232011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12260Os.3748.1.S1_at9/111+6696264..6700173Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os01g12270Os.3749.1.S1_at3/111+6701205..6701468expressed protein
LOC_Os01g12280Os.17038.2.S1_x_at9/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.1.S1_at8/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.2.S1_at1/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12290OsAffx.22097.1.S1_at11/111+6708617..6710944D-mannose binding lectin family protein
LOC_Os01g12300OsAffx.22097.2.S1_x_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12300OsAffx.22097.3.S1_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12310NANA1+6719007..6719402Histone deacetylase RPD3, putative
LOC_Os01g12320Os.3754.1.S1_at11/111+6721743..6725340GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g12330Os.31624.1.S1_at11/111+6728954..6732284expressed protein
LOC_Os01g12330Os.31624.2.S1_x_at11/111+6728954..6732284expressed protein
LOC_Os01g12340OsAffx.9045.1.S1_x_at4/111+6732560..6743100retrotransposon protein, putative, unclassified
LOC_Os01g12340OsAffx.9905.1.S1_at3/111+6732560..6743100retrotransposon protein, putative, unclassified
LOC_Os01g12340OsAffx.9045.1.S1_at3/111+6732560..6743100retrotransposon protein, putative, unclassified
LOC_Os01g12350Os.31312.2.S1_x_at2/111+6744278..6747530retrotransposon protein, putative, unclassified
LOC_Os01g12350Os.31312.5.S1_x_at2/111+6744278..6747530retrotransposon protein, putative, unclassified
LOC_Os01g12360OsAffx.22492.1.S1_x_at1/111+6748159..6754314retrotransposon protein, putative, unclassified, expressed
LOC_Os01g12360OsAffx.22492.1.S1_at1/111+6748159..6754314retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3754.1.S1_at--399--5971Chr01:6724159..6724183 (25 bp)
GAGAAGCACCCGGATGTCGCCATCA
LOC_Os01g12320
Os.3754.1.S1_at--150--2171Chr01:6724131..6724155 (25 bp)
ACACCGATTTGTTCAGACACGTCTC
LOC_Os01g12320
Os.3754.1.S1_at--517--5631Chr01:6724116..6724140 (25 bp)
GACACGTCTCGGAGATGGTCCAGAA
LOC_Os01g12320
Os.3754.1.S1_at--1080--2431Chr01:6722186..6722210 (25 bp)
AAAAGGATGTTCTCAGCGTTTGCTG
LOC_Os01g12320
Os.3754.1.S1_at--559--2671Chr01:6722082..6722106 (25 bp)
AAGAGCTTGTACTGGGACGGCGTCC
LOC_Os01g12320
Os.3754.1.S1_at--287--4651Chr01:6722063..6722087 (25 bp)
GCGTCCACTTAACCGAGGCAGCTTA
LOC_Os01g12320
Os.3754.1.S1_at--14--2111Chr01:6722033..6722057 (25 bp)
ACATCGCCGATGATTGGCTTCATGC
LOC_Os01g12320
Os.3754.1.S1_at--779--4891Chr01:6722017..6722041 (25 bp)
GCTTCATGCCATAACCTTATCTGCA
LOC_Os01g12320
Os.3754.1.S1_at--45--10431Chr01:6722001..6722025 (25 bp)
TTATCTGCAAGAGCTACCTCCTAAA
LOC_Os01g12320
Os.3754.1.S1_at--261--10791Chr01:6721900..6721924 (25 bp)
TTGTTGGTCGATTTTCCTTCGTGAA
LOC_Os01g12320
Os.3754.1.S1_at--6--9851Chr01:6721814..6721838 (25 bp)
TAAATTGGCGGTCTCATCGATTCGT
LOC_Os01g12320
Target Sequence 
GAGAAGCACCCGGATGTCGCCATCATGCACACCGATTTGTTCAGACACGTCTCGGAGATGGTCCAGAATCCTGACAAGTT
TGGGTTTCAAAAGGATGTTCTCAGCGTTTGCTGTGGAGGTCCCGGAAAATACCACTACAACACCAGGATAATCTGCGGCG
ATGAAGGTGCGACCACCTGTGTGGATCCATCCAAGAGCTTGTACTGGGACGGCGTCCACTTAACCGAGGCAGCTTACCAC
TACATCGCCGATGATTGGCTTCATGCCATAACCTTATCTGCAAGAGCTACCTCCTAAAATTGATATGGCACGAACGTCGG
ATACACACATGTAATGCTAGTTTTTTTTTTAAAAAGAACTACATGTAATGTTAGTTGTTGGTCGATTTTCCTTCGTGAAG
GAACATCAGCCTTGCAGATGATCCGAGTAAAATTGTGGAGAAAAAACTCCTCTATTCAATTAAATTGGCGGTCTCATCGA
TTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis