Browse Element(s) Details


Os.37828.1.S1_at

Description gb:AK063536.1
DB_XREF= gi:32973554
TID=Os.37828.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-B11, full insert sequence.
FL= gb:AK063536.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4382011/11RAC-like GTP binding protein ARAC7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43770Os.18433.1.S1_at11/115+25363694..25369207NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g43770Os.18433.1.S1_s_at10/115+25363694..25369207NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g43780OsAffx.27296.1.S1_at11/115+25370570..25373591hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os05g43790Os.26796.1.S1_at11/115+25375397..25378937Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g43790Os.26796.2.S1_at11/115+25375397..25378937Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g43800Os.54844.1.S1_at11/115+25381341..25383227expressed protein
LOC_Os05g43810OsAffx.26001.4.S1_at11/115+25383841..25388015hypothetical protein
LOC_Os05g43820Os.37828.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.10032.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.45896.1.S1_x_at5/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43830Os.5650.1.S1_at9/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10728.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10719.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43840Os.12680.1.S1_at11/115+25406143..25408396CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os05g43850Os.10160.1.S1_at11/115+25414129..25418428Tub family protein, expressed
LOC_Os05g43860Os.15784.1.A1_s_at11/115+25419871..25422735expressed protein
LOC_Os05g43860OsAffx.15091.1.S1_at9/115+25419871..25422735expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0000902biological_processcellular morphogenesis
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0009860biological_processpollen tube growth
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0005886cellular_componentplasma membrane
GO:0030427cellular_componentsite of polarized growth
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37828.1.S1_at--881--6551Chr05:25394416..25394440 (25 bp)
GATTACTGTACTCCTATTTGACACA
LOC_Os05g43820
Os.37828.1.S1_at--1138--2232Chr05:25394483..25394507 (25 bp)
AAATTCTGCTTCAGGCCATGCTTTA
LOC_Os05g43820
Os.37828.1.S1_at--927--10411Chr05:25394505..25394529 (25 bp)
TTATGAAGATCCCAGGCAGACATCA
LOC_Os05g43820
Os.37828.1.S1_at--144--9611Chr05:25394544..25394568 (25 bp)
TCATACCGGCCCTGCAACATAAAAA
LOC_Os05g43820
Os.37828.1.S1_at--505--451Chr05:25394601..25394625 (25 bp)
ATCTCACCTGTATAACTCTTTGCAC
LOC_Os05g43820
Os.37828.1.S1_at--233--2811Chr05:25394680..25394704 (25 bp)
AAGGCCTAATTTGCCAGTCGAGGGA
LOC_Os05g43820
Os.37828.1.S1_at--642--571Chr05:25394718..25394742 (25 bp)
ATGCCACTTTACAGTTCCATTGTCA
LOC_Os05g43820
Os.37828.1.S1_at--1036--2271Chr05:25394767..25394791 (25 bp)
AAATCCATGTCTTCTTGGCATCCTA
LOC_Os05g43820
Os.37828.1.S1_at--666--8492Chr05:25394782..25394806 (25 bp)
TGGCATCCTACATCTACATGCTAGA
LOC_Os05g43820
Os.37828.1.S1_at--385--1572Chr05:25394846..25394870 (25 bp)
AGCTACAGCTAATCTCCAACATGAG
LOC_Os05g43820
Os.37828.1.S1_at--1017--5951Chr05:25394868..25394892 (25 bp)
GAGAATTCGATCATGTTTGCTACAA
LOC_Os05g43820
Target Sequence 
GATTACTGTACTCCTATTTGACACAGTTATTTTGGCAATCATTTACATGAAAAGAATCATTTACCTTAAATTCTGCTTCA
GGCCATGCTTTATGAAGATCCCAGGCAGACATCATAGGACAGCAAACATCATACCGGCCCTGCAACATAAAAACACCGAT
CACTATCAGGTACTACAATAGTATCATCTCACCTGTATAACTCTTTGCACAAAACTTACAAAATACTCCACTTTACAGTA
GGAGTAGTAGCTATAAAAAGCATCAAGGCCTAATTTGCCAGTCGAGGGAACAATTATGAATAATGCCACTTTACAGTTCC
ATTGTCATTATGCATTGCATTACAGCACACAAAATCCATGTCTTCTTGGCATCCTACATCTACATGCTAGATCAAACATT
TGGACACGACAATCAACATCAAATCAGAGGAGCTACAGCTAATCTCCAACATGAGAATTCGATCATGTTTGCTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis