Browse Element(s) Details


Os.37837.1.A1_at

Description gb:AK105007.2
DB_XREF= gi:42821622
TID=Os.37837.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37837 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-006-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-006-F03, full insert sequence.
FL= gb:AK105007.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6772011/11ABC1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67690NANA1+39663660..39668006retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g67700OsAffx.23962.1.S1_at11/111+39672282..39672935hypothetical protein
LOC_Os01g67710OsAffx.21785.2.S1_at9/111+39676432..39678264hypothetical protein
LOC_Os01g67710OsAffx.21785.1.S1_at1/111+39676432..39678264hypothetical protein
LOC_Os01g67710Os.53962.1.S1_at1/111+39676432..39678264hypothetical protein
LOC_Os01g67720Os.37837.1.A1_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67720Os.9904.2.S1_x_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67720Os.9904.1.S1_x_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67730Os.16682.2.S1_x_at9/111+39690092..396923101-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os01g67730Os.16682.1.S1_at8/111+39690092..396923101-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os01g67740Os.48518.1.S1_at11/111+39692769..39701077SMC proteins Flexible Hinge Domain containing protein, expressed
LOC_Os01g67750Os.49959.1.S1_at11/111+39701785..39706394expressed protein
LOC_Os01g67760OsAffx.6537.1.S1_at1/111+39708477..39709213hypothetical protein
LOC_Os01g67770Os.49428.1.S1_at11/111+39714083..39716843myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37837.1.A1_at--834--7471Chr01:39684367..39684391 (25 bp)
GGAAGGTAGACTCAACTAAACTTGT
LOC_Os01g67720
Os.37837.1.A1_at--313--5311Chr01:39684366..39684390 (25 bp)
GAAGGTAGACTCAACTAAACTTGTT
LOC_Os01g67720
Os.37837.1.A1_at--484--7831Chr01:39684363..39684387 (25 bp)
GGTAGACTCAACTAAACTTGTTTCA
LOC_Os01g67720
Os.37837.1.A1_at--679--10031Chr01:39684361..39684385 (25 bp)
TAGACTCAACTAAACTTGTTTCAAT
LOC_Os01g67720
Os.37837.1.A1_at--727--3171Chr01:39684340..39684364 (25 bp)
CAATTTGTATTGTGGAATCTTCCTG
LOC_Os01g67720
Os.37837.1.A1_at--756--211Chr01:39684338..39684362 (25 bp)
ATTTGTATTGTGGAATCTTCCTGAG
LOC_Os01g67720
Os.37837.1.A1_at--747--8751Chr01:39684335..39684359 (25 bp)
TGTATTGTGGAATCTTCCTGAGAAT
LOC_Os01g67720
Os.37837.1.A1_at--93--7531Chr01:39684329..39684353 (25 bp)
GTGGAATCTTCCTGAGAATAATGTC
LOC_Os01g67720
Os.37837.1.A1_at--719--8171Chr01:39684327..39684351 (25 bp)
GGAATCTTCCTGAGAATAATGTCTT
LOC_Os01g67720
Os.37837.1.A1_at--345--3071Chr01:39684325..39684349 (25 bp)
AATCTTCCTGAGAATAATGTCTTGT
LOC_Os01g67720
Os.37837.1.A1_at--465--3631Chr01:39684322..39684346 (25 bp)
CTTCCTGAGAATAATGTCTTGTTGG
LOC_Os01g67720
Target Sequence 
GGAAGGTAGACTCAACTAAACTTGTTTCAATTTGTATTGTGGAATCTTCCTGAGAATAATGTCTTGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37837.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis