Browse Element(s) Details


Os.37845.1.S1_at

Description gb:AK102119.1
DB_XREF= gi:32987328
TID=Os.37845.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative eIF3e (OJ1641_C04.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033084M22, full insert sequence.
FL= gb:AK102119.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0725011/11Eukaryotic translation initiation factor 3 subunit 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07210OsAffx.28321.1.S1_x_at11/117+3571454..3572054expressed protein
LOC_Os07g07220Os.22816.1.S1_at9/117+3572757..3575085small nuclear ribonucleoprotein associated protein B, putative, expressed
LOC_Os07g07230Os.38580.1.S1_at7/117+3581660..3586072leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g07240Os.15220.1.S1_a_at11/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07240Os.15220.1.S2_at10/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07250Os.37845.1.S1_at11/117+3594010..3597957Eukaryotic translation initiation factor 3 subunit 6, putative, expressed
LOC_Os07g07260Os.27399.1.S1_at11/117+3599027..3609095Glutamine-dependent NAD, putative, expressed
LOC_Os07g07270Os.14695.1.S1_at11/117+3609086..3612703BTB/POZ domain containing protein, expressed
LOC_Os07g07280Os.47892.1.S1_at11/117+3614470..3616490expressed protein
LOC_Os07g07280Os.20629.1.S1_x_at6/117+3614470..3616490expressed protein
LOC_Os07g07290OsAffx.28322.1.S1_at11/117+3616837..3617614hypothetical protein
LOC_Os07g07300Os.27647.1.S1_at9/117+3618411..3629120expressed protein
LOC_Os07g07300Os.27647.2.S1_x_at7/117+3618411..3629120expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006352biological_processtranscription initiation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005852cellular_componenteukaryotic translation initiation factor 3 complex
GO:0008180cellular_componentsignalosome complex
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37845.1.S1_at--124--7531Chr07:3597490..3597514 (25 bp)
GTGGAGCCAGCTCAAGCAATGCAAC
LOC_Os07g07250
Os.37845.1.S1_at--826--651Chr07:3597508..3597532 (25 bp)
ATGCAACAGGCAACTCGGTGATATT
LOC_Os07g07250
Os.37845.1.S1_at--63--5491Chr07:3597539..3597563 (25 bp)
GAACATCAATTTTGAGGCGCCCAGA
LOC_Os07g07250
Os.37845.1.S1_at--646--6211Chr07:3597552..3597576 (25 bp)
GAGGCGCCCAGAACTCGTGAAGTTA
LOC_Os07g07250
Os.37845.1.S1_at--823--10011Chr07:3597595..3597619 (25 bp)
TAGCACCGACGTCGCGTTATTAGTA
LOC_Os07g07250
Os.37845.1.S1_at--1102--6791Chr07:3597610..3597634 (25 bp)
GTTATTAGTACTTGCGATTCCTCTA
LOC_Os07g07250
Os.37845.1.S1_at--1112--5531Chr07:3597723..3597747 (25 bp)
GAAACCCAGGAGGTGTGTTCTCGTT
LOC_Os07g07250
Os.37845.1.S1_at--678--7471Chr07:3597735..3597759 (25 bp)
GTGTGTTCTCGTTCGCTGCAGCATA
LOC_Os07g07250
Os.37845.1.S1_at--685--7431Chr07:3597869..3597893 (25 bp)
GTGTTTCGTGTGTCTGTGAAGTGCT
LOC_Os07g07250
Os.37845.1.S1_at--616--6671Chr07:3597902..3597926 (25 bp)
GTTGCTATTTAGTTTCGAGTTCGAT
LOC_Os07g07250
Os.37845.1.S1_at--414--4071Chr07:3597917..3597941 (25 bp)
CGAGTTCGATGCTTTTTGTCTAGAT
LOC_Os07g07250
Target Sequence 
GTGGAGCCAGCTCAAGCAATGCAACAGGCAACTCGGTGATATTGACAGAGAACATCAATTTTGAGGCGCCCAGAACTCGT
GAAGTTAGACAAACTANTAAACTTTTAGCACCGACGTCGCGTTATTAGTACTTGCGATTCCTCTATAAAGAAAAAGGATT
CAACAACTAGTGTACAGAAATATTTCTAATTACGTATCAAAGCTACTAATACAGCAATATCCCGGGGCAAAAGGAAACCC
AGGAGGTGTGTTCTCGTTCGCTGCAGCATATGCTGAAGTTTTTGTTATTTTGTACTTGGAATCCTGTGGCTGAACTGCTG
AAGTTAATCCTTTCTTTTGTACTAGACTGTACTAGAATCANGCTTACCTGATTGTGGTGGTGTTTCGTGTGTCTGTGAAG
TGCTGAAGTGTGGTTGCTATTTAGTTTCGAGTTCGATGCTTTTTGTCTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis