Browse Element(s) Details


Os.37935.1.S1_at

Description gb:AK073026.1
DB_XREF= gi:32983049
TID=Os.37935.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37935 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-310-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023144G12, full insert sequence.
FL= gb:AK104415.1 gb:AK060219.1 gb:AK073026.1 gb:AK060947.1 gb:AK104642.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5267011/11GRAM domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52594Os.11862.1.S1_at11/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.11862.2.S1_at11/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.51354.1.S1_at2/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.51430.1.S1_at1/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52620OsAffx.3585.1.S1_at11/113+30130103..30131323pentatricopeptide, putative
LOC_Os03g52630Os.10701.1.S1_at11/113+30132228..30135671endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os03g52640Os.27782.1.S1_at11/113+30138771..30142128expressed protein
LOC_Os03g52650OsAffx.3586.1.S1_s_at11/113+30143453..30144678Syntaxin-related protein KNOLLE, putative, expressed
LOC_Os03g52660Os.5148.1.S1_at11/113+30147820..30149331ATP synthase F1, delta subunit family protein, expressed
LOC_Os03g52670Os.37935.1.S1_at11/113+30149372..30150915GRAM domain containing protein, expressed
LOC_Os03g52680Os.18485.1.S1_s_at11/113+30154305..30155477expressed protein
LOC_Os03g52690Os.12286.1.S1_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.12286.1.S2_a_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.39828.1.A1_s_at9/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52700Os.15893.1.A1_at9/113+30165974..30170841expressed protein
LOC_Os03g52710OsAffx.13471.1.S1_at11/113+30172325..30174164expressed protein
LOC_Os03g52720Os.53148.1.S1_at11/113+30174754..30176904magnesium-dependent phosphatase-1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37935.1.S1_at--407--431Chr03:30149821..30149944 (25 bp)
ATCTACAAGGTAGTGCTTCCCCTGA
LOC_Os03g52670
Os.37935.1.S1_at--863--7311Chr03:30149809..30149833 (25 bp)
GTGCTTCCCCTGAACCAAGTGAAAT
LOC_Os03g52670
Os.37935.1.S1_at--365--1031Chr03:30149792..30149816 (25 bp)
AGTGAAATCGGTGAACCCATCCGCC
LOC_Os03g52670
Os.37935.1.S1_at--482--6011Chr03:30149749..30149773 (25 bp)
GAGAGGTACATCCAGATCATGACGA
LOC_Os03g52670
Os.37935.1.S1_at--644--671Chr03:30149731..30149755 (25 bp)
ATGACGACGGACAACCACGAGTTCT
LOC_Os03g52670
Os.37935.1.S1_at--844--4831Chr03:30149614..30149638 (25 bp)
GCTAAGCTTCACTCTGATCCTAATA
LOC_Os03g52670
Os.37935.1.S1_at--696--9491Chr03:30149583..30149607 (25 bp)
TCTGCCGATTTATATTCCATTGGTG
LOC_Os03g52670
Os.37935.1.S1_at--936--2451Chr03:30149508..30149532 (25 bp)
AACAAAATCTGATGCCGTGTGCCCG
LOC_Os03g52670
Os.37935.1.S1_at--871--8691Chr03:30149491..30149515 (25 bp)
TGTGCCCGCGTGTATGATCTGTAAT
LOC_Os03g52670
Os.37935.1.S1_at--442--8851Chr03:30149477..30149501 (25 bp)
TGATCTGTAATTCGCTCATCAGTGT
LOC_Os03g52670
Os.37935.1.S1_at--40--6611Chr03:30149423..30149447 (25 bp)
GATTGTGCTGAACTCACTATCCTTT
LOC_Os03g52670
Target Sequence 
ATCTACAAGGTAGTGCTTCCCCTGAACCAAGTGAAATCGGTGAACCCATCCGCCAGCATGACGAACAGGGGCGAGAGGTA
CATCCAGATCATGACGACGGACAACCACGAGTTCTGGTTCATGGGGTTCGTCTCCTACGACAAGGCGCTCAAGAATCTCT
ACGAAGCCCTGCAGCGCCGTGCGTGATCGTCGCCCACGGCCACCGCAGCTAAGCTTCACTCTGATCCTAATATACATATC
TGCCGATTTATATTCCATTGGTGAACTTGTAAGCTTCAGATCTTGCTCTGGAATAAGTGTGACACATCACTAAAACAAAA
TCTGATGCCGTGTGCCCGCGTGTATGATCTGTAATTCGCTCATCAGTGTAGAATGTGCTGAATTCACTTGTTATTGTAGA
TTGTGCTGAACTCACTATCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis