Browse Element(s) Details


Os.38022.2.S1_x_at

Description gb:NM_192150.1
DB_XREF= gi:34911383
GEN=P0034C09.23
TID=Os.38022.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38022 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative glutathione S-transferase GST 22 (P0034C09.23), mRNA.
PROD=putative glutathione S-transferase GST 22
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4971011/11Glutathione S-transferase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49670Os.7027.1.S1_a_at11/111+28868405..28872257Cytidylyltransferase family protein, expressed
LOC_Os01g49670Os.7027.1.S1_s_at11/111+28868405..28872257Cytidylyltransferase family protein, expressed
LOC_Os01g49680Os.32672.1.S1_x_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.2.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.3.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49690Os.18690.1.S1_at11/111+28882793..28887542Serine/threonine protein phosphatase 6, putative, expressed
LOC_Os01g49700OsAffx.2285.1.S1_at11/111+28888541..28888850hypothetical protein
LOC_Os01g49710Os.38022.2.S1_x_at11/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49710Os.38022.1.S1_at3/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49720OsAffx.11535.1.S1_at11/111+28895823..28896613glutathione S-transferase GSTU6, putative, expressed
LOC_Os01g49730Os.57153.1.S1_at11/111+28898884..28899768expressed protein
LOC_Os01g49740Os.28814.1.S1_at11/111+28899980..28902522expressed protein
LOC_Os01g49740Os.28814.2.S1_x_at11/111+28899980..28902522expressed protein
LOC_Os01g49750Os.29043.1.S1_at11/111+28902662..28903521expressed protein
LOC_Os01g49760Os.33553.2.S1_x_at11/111+28904947..28910543expressed protein
LOC_Os01g49760Os.33553.1.S1_at11/111+28904947..28910543expressed protein
LOC_Os01g49770Os.7556.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.45918.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.7556.1.S1_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49780NANA1+28916796..28917296hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38022.2.S1_x_at--128--531Chr01:28894327..28894351 (25 bp)
ATCGAGCAGGACCTCTTCGGCAAGA
LOC_Os01g49710
Os.38022.2.S1_x_at--599--10611Chr01:28894312..28894336 (25 bp)
TTCGGCAAGAGCGAGCTCCTGCTCA
LOC_Os01g49710
Os.38022.2.S1_x_at--1034--5891Chr01:28894300..28894324 (25 bp)
GAGCTCCTGCTCAAGAGCAACCCGG
LOC_Os01g49710
Os.38022.2.S1_x_at--205--1151Chr01:28894227..28894251 (25 bp)
AGTCGCGCGTGGTTCTCGAGTACGT
LOC_Os01g49710
Os.38022.2.S1_x_at--547--8651Chr01:28894130..28894153 (24 bp)
TGGGCGACCTACTTCGACAGCACGT
LOC_Os01g49710
Os.38022.2.S1_x_at--147--2151Chr01:28893997..28894137 (25 bp)
ACAGCACGTTCTTCCCGCCGTGGAG
LOC_Os01g49710
Os.38022.2.S1_x_at--476--1511Chr01:28893946..28893970 (25 bp)
AGCAGAGAGCGGAGGCCTTCATGAA
LOC_Os01g49710
Os.38022.2.S1_x_at--428--1631Chr01:28893939..28893963 (25 bp)
AGCGGAGGCCTTCATGAACGCCGTA
LOC_Os01g49710
Os.38022.2.S1_x_at--185--3511Chr01:28893927..28893951 (25 bp)
CATGAACGCCGTACCTCAGGTGGAG
LOC_Os01g49710
Os.38022.2.S1_x_at--251--1651Chr01:28893895..28893919 (25 bp)
AGCGAGCGTTCGTGGAGTGCTCCAA
LOC_Os01g49710
Os.38022.2.S1_x_at--465--4251Chr01:28893679..28893703 (25 bp)
CCGGGAAGCTCCTGGAGCACTACAA
LOC_Os01g49710
Target Sequence 
ATCGAGCAGGACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCCGTCCTCATCCA
TGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGACGAGGCCTGGCCCGGGGCCGCGCCGCCGCTCC
TCCCGGCCGACCCCCACGACCGCGCCACCGCTCGCTTCTGGGCGACCTACTTCGACAGCACGTTCTTCCCGCCGTGGAGG
GCGCTGATGAGGGCGACGACGGCGGAGCAGAGAGCGGAGGCCTTCATGAACGCCGTACCTCAGGTGGAGGTGCTGGAGCG
AGCGTTCGTGGAGTGCTCCAAGGGGAAGGCGTTCTTCGGCGGCGACGCCGTCGGGCTCGTCGACGTCGTGGTCGGCGGCT
TCGTGGTGTGGTTCAAGGTGGTGGACGAGGTGGCCGGCTCCAGCCTCCTCGACGAGGCCAAGTTCCCGGGCCTGGCGGCG
TGGGCGGAGCGGTTCTTGGCGGTGGACGCCGTCCGGGAGGCGATGCCCGACGCCGGGAAGCTCCTGGAGCACTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38022.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis