Browse Element(s) Details


Os.38153.1.S1_at

Description gb:AK069661.1
DB_XREF= gi:32979685
TID=Os.38153.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38153 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028O16, full insert sequence.
FL= gb:AK069661.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4605011/11Plasmid Maintenance Protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46000OsAffx.16572.1.S1_x_at11/114+27033012..27035010cyclin family protein, putative
LOC_Os04g46000OsAffx.16572.4.S1_x_at2/114+27033012..27035010cyclin family protein, putative
LOC_Os04g46010OsAffx.4104.1.S1_at11/114+27037422..27039842pentatricopeptide, putative, expressed
LOC_Os04g46010Os.27576.1.S1_at1/114+27037422..27039842pentatricopeptide, putative, expressed
LOC_Os04g46020Os.14573.1.S1_at11/114+27041273..27045424GATA zinc finger family protein, expressed
LOC_Os04g46020OsAffx.10931.3.S1_at3/114+27041273..27045424GATA zinc finger family protein, expressed
LOC_Os04g46030NANA4+27049237..27049893hypothetical protein
LOC_Os04g46040OsAffx.14288.1.S1_at11/114+27052758..27053127hypothetical protein
LOC_Os04g46050Os.38153.1.S1_at11/114+27056244..27063655Plasmid Maintenance Protein containing protein, expressed
LOC_Os04g46060Os.53641.1.S1_at11/114+27065188..27071895WRKY DNA binding domain containing protein, expressed
LOC_Os04g46060OsAffx.26480.1.S1_s_at11/114+27065188..27071895WRKY DNA binding domain containing protein, expressed
LOC_Os04g46079Os.53223.1.S1_at10/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.9045.1.S1_x_at4/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.9045.1.S1_at3/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.22492.1.S1_x_at1/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.22492.1.S1_at1/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38153.1.S1_at--499--9491Chr04:27056951..27057416 (25 bp)
TCTGCTGAATGAACACCGCCATATC
LOC_Os04g46050
Os.38153.1.S1_at--37--4931Chr04:27056913..27056937 (25 bp)
GCTTGTTTGCCGTGGATGGATTCTC
LOC_Os04g46050
Os.38153.1.S1_at--565--531Chr04:27056700..27056890 (25 bp)
ATCCCACTACTCTCACTGGTGAAAG
LOC_Os04g46050
Os.38153.1.S1_at--877--5991Chr04:27056645..27056669 (25 bp)
GAGACCCTGATATTCTTTCGCTGAA
LOC_Os04g46050
Os.38153.1.S1_at--911--6471Chr04:27056595..27056619 (25 bp)
GATACTGATCGGATCTCTACCACAG
LOC_Os04g46050
Os.38153.1.S1_at--281--7351Chr04:27056552..27056576 (25 bp)
GTGAAGATGCCCAGCCTGTGTAAAT
LOC_Os04g46050
Os.38153.1.S1_at--55--2271Chr04:27056531..27056555 (25 bp)
AAATCACTGGATCAATCGAGCCCCT
LOC_Os04g46050
Os.38153.1.S1_at--529--1571Chr04:27056495..27056519 (25 bp)
AGCTCGGAAGATACTACACCTTGCC
LOC_Os04g46050
Os.38153.1.S1_at--611--8651Chr04:27056465..27056489 (25 bp)
TGGGCTATTCAAGGCTCACACTTTA
LOC_Os04g46050
Os.38153.1.S1_at--605--10451Chr04:27056262..27056286 (25 bp)
TTACGTCAACCCACTTGCTGTATAG
LOC_Os04g46050
Os.38153.1.S1_at--1103--3871Chr04:27056245..27056269 (25 bp)
CTGTATAGCGTGACTCTTGGCCGAT
LOC_Os04g46050
Target Sequence 
TCTGCTGAATGAACACCGCCATATCAGTGGCTACAAGTGCTTGTTTGCCGTGGATGGATTCTCCAGAGCGAAAATTCAAC
CTCGAATCCCACTACTCTCACTGGTGAAAGAGCCAAAAGTGTTTGCACATGGGAATACGAGAGACCCTGATATTCTTTCG
CTGAATTGGCCCGGTTGCCCTTGAGGTGAGGATACTGATCGGATCTCTACCACAGGACCACTAACTGCCAATTGTGAAGA
TGCCCAGCCTGTGTAAATCACTGGATCAATCGAGCCCCTTCCCAAACCCCAGCTCGGAAGATACTACACCTTGCCACCTT
TGGGCTATTCAAGGCTCACACTTTAGCGCAAAAAACTCGCGTTTTTATGTTGAAACCATGTGCTTCGGTTTCNGACCNAG
TTGCTCGTATCTGGTGGCCAANAGGAGGGGAAAAAAAACTGAGGAATAGGAGAGACCATAACAATCTTGTGCTCTAGCAA
GTTGCTCCNTTTCATNNCACAAGTACCATGTATCCTATCTTACATTACGTCAACCCACTTGCTGTATAGCGTGACTCTTG
GCCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis