Browse Element(s) Details


Os.38163.1.S1_at

Description gb:AK101371.1
DB_XREF= gi:32986580
TID=Os.38163.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38163 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serinethreonine kinase PBS1 protein (P0492G09.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033035N01, full insert sequence.
FL= gb:AK060413.1 gb:AK101371.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7100011/11Serine/threonine-protein kinase RLCKVII, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70960Os.6336.1.S1_at11/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960Os.6336.2.S1_at10/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960OsAffx.26985.1.S1_x_at1/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70970Os.18382.1.S1_at11/111+41406321..41408855Protein kinase domain containing protein, expressed
LOC_Os01g70970OsAffx.12696.1.S1_at1/111+41406321..41408855Protein kinase domain containing protein, expressed
LOC_Os01g70980Os.9236.1.S1_at11/111+41412751..41415017expressed protein
LOC_Os01g70990OsAffx.21835.1.S1_x_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g70990OsAffx.21835.1.S1_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g71000Os.38163.1.S1_at11/111+41422760..41427216Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g71010Os.10088.1.S1_a_at11/111+41427345..41431903Lipase family protein, expressed
LOC_Os01g71020OsAffx.11810.1.S1_x_at11/111+41433477..41433785hypothetical protein
LOC_Os01g71030OsAffx.11811.1.S1_at9/111+41436399..41438452hypothetical protein
LOC_Os01g71040Os.18275.1.S1_at11/111+41438853..41441707expressed protein
LOC_Os01g71040Os.18275.1.S2_at11/111+41438853..41441707expressed protein
LOC_Os01g71050Os.28078.1.S1_at11/111+41444065..41449088MSP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005792cellular_componentmicrosome
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38163.1.S1_at--436--10271Chr01:41426630..41426654 (25 bp)
TTTGACATGTCTTAGATCTCCCGGC
LOC_Os01g71000
Os.38163.1.S1_at--197--5271Chr01:41426764..41426788 (25 bp)
GAATGCCTTTTCTTGGTTACCTGAT
LOC_Os01g71000
Os.38163.1.S1_at--821--5071Chr01:41426806..41426830 (25 bp)
GCACCACCTGTGTTACGAATGTTAC
LOC_Os01g71000
Os.38163.1.S1_at--417--8311Chr01:41426845..41426869 (25 bp)
GGCTACCTGAGGACGTGAAGTTACT
LOC_Os01g71000
Os.38163.1.S1_at--370--6691Chr01:41426951..41426975 (25 bp)
GTTGCCTGAGCACTTATTTATTTGT
LOC_Os01g71000
Os.38163.1.S1_at--1063--6871Chr01:41426974..41426998 (25 bp)
GTATTAGCTTACTGTACCTCTCATG
LOC_Os01g71000
Os.38163.1.S1_at--941--6971Chr01:41426987..41427011 (25 bp)
GTACCTCTCATGTATCTTAGCGTGA
LOC_Os01g71000
Os.38163.1.S1_at--631--7351Chr01:41427008..41427032 (25 bp)
GTGAACGTTGTTCGACATGCAGCAA
LOC_Os01g71000
Os.38163.1.S1_at--1118--7071Chr01:41427100..41427124 (25 bp)
GTCAATCATGTGTTCATCTTGCAAA
LOC_Os01g71000
Os.38163.1.S1_at--321--6611Chr01:41427153..41427177 (25 bp)
GATTGGTGTGGCAGTGCTCTTCGCA
LOC_Os01g71000
Os.38163.1.S1_at--1025--4811Chr01:41427168..41427192 (25 bp)
GCTCTTCGCATTGTTGCTATCTGCA
LOC_Os01g71000
Target Sequence 
TTTGACATGTCTTAGATCTCCCGGCGTCCATTCCTTGTGAATGTGATTGTGTCATGTGTCTTTAGAGTTCGGNTCCGTTC
GGGAGCCGATAAAATTCAGCTGGAAAGGTAGGCAACAGAAGAGAGGAACCTGATGAATGCCTTTTCTTGGTTACCTGATC
GCCATGCTCATGCTCAGCACCACCTGTGTTACGAATGTTACANCATTTCAGGTTTGGCTACCTGAGGACGTGAAGTTACT
TCCGATGAGAATTCAGGTTTGGAGATAGGACACATTACCTGTGTTTCGTACAGTTTTTTCTTTTCTTTTCTTTTCTTTTG
AGTTGCCTGAGCACTTATTTATTTGTATTAGCTTACTGTACCTCTCATGTATCTTAGCGTGAACGTTGTTCGACATGCAG
CAAGAGGTTTTTATCTGTATCAAGCTATTTCAGAGCCAATGTGTTGTACATGTAATATTTTGCAGTAGTAGTCAATCATG
TGTTCATCTTGCAAAGCCAAATGAGCTGTATCAAACCAAATCTGATTGGTGTGGCAGTGCTCTTCGCATTGTTGCTATCT
GCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis