Browse Element(s) Details


Os.38188.1.A1_at

Description gb:AK059466.1
DB_XREF= gi:32969484
TID=Os.38188.1
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.38188 (NCBI UniGene Cluster)
UG_TITLE=CaMK1 (CaMK1) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-D08, full insert sequence.
FL= gb:AK059466.1 gb:AF368282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2507010/11CDPK-related protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25030Os.18713.1.S1_at11/113+14268397..14272079GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g25040Os.5919.1.S1_at11/113+14274404..14276702GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g25050OsAffx.13014.1.S1_at11/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25050OsAffx.13014.1.S1_s_at11/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25050Os.8895.1.S1_at10/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25060Os.54316.1.S1_at11/113+14281127..14281793expressed protein
LOC_Os03g25070Os.38188.1.A1_at10/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25070Os.51355.1.S1_at2/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25070Os.22775.1.S2_a_at1/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25080OsAffx.25219.1.S1_at11/113+14302995..14304494F-box domain containing protein
LOC_Os03g25090OsAffx.3318.1.S1_at11/113+14304997..14306169hypothetical protein
LOC_Os03g25100OsAffx.10633.1.S1_at6/113+14309593..14314064retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g25110OsAffx.25220.2.S1_at11/113+14315946..14320099expressed protein
LOC_Os03g25120OsAffx.13015.1.S1_at11/113+14321484..14324367heat shock transcription factor family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004723molecular_functioncalcium-dependent protein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38188.1.A1_at--992--4252Chr05:28942729..28942753 (25 bp)
CCGGCAAGCGTACGAGTTCTTTGAT
NONE
Os.38188.1.A1_at--694--5771Chr03:14301494..14301599 (25 bp)
GACGAGCTCGCATCGGAACTTGGAT
LOC_Os03g25070
Os.38188.1.A1_at--364--9312Chr05:28942902..28942926 (25 bp)
TCCCCTACATGTTGTTCTCCAAGAT
NONE
Os.38188.1.A1_at--659--2411Chr03:14301658..14301682 (25 bp)
AAAACTCAGCTTCCTTGGGTTCATG
LOC_Os03g25070
Os.38188.1.A1_at--782--51Chr03:14301688..14301712 (25 bp)
ATTGCATGGAGTTTCTTCGCGTACC
LOC_Os03g25070
Os.38188.1.A1_at--352--4612Chr05:28942996..28943019 (24 bp)
GCGTACCATCCCAAAAACCTGAGAT
NONE
Os.38188.1.A1_at--704--3731Chr03:14301774..14301798 (25 bp)
CTAAACTAATCTCTGGCTGTCTGGA
LOC_Os03g25070
Os.38188.1.A1_at--237--951Chr03:14301850..14301874 (25 bp)
AGTGAAAAAGCTCTCCTGTCAGGCC
LOC_Os03g25070
Os.38188.1.A1_at--83--10311NONE
TTTCGCCTTCTCTTTACCAGATGAT
NONE
Os.38188.1.A1_at--391--2571Chr03:14302017..14302041 (25 bp)
AACTGTGTGCGTTTGATCTTCGCCG
LOC_Os03g25070
Os.38188.1.A1_at--629--431Chr03:14302032..14302056 (25 bp)
ATCTTCGCCGATCTGTGAATGTCGT
LOC_Os03g25070
Target Sequence 
CCGGCAAGCGTACGAGTTCTTTGATAAGGAGGGTAACCGACCAATTGTGATCGACGAGCTCGCATCGGAACTTGGATTGG
GTCCTTCGGTTCCCCTACATGTTGTTCTCCAAGATTGGATCAGACATCCTGATGGAAAACTCAGCTTCCTTGGGTTCATG
AAACTATTGCATGGAGTTTCTTCGCGTACCATCCCAAAAACCTGAGATAATAACTTATTTTCTTACATCAACCAAGGCAA
AAGTGTGATGACTAAACTAATCTCTGGCTGTCTGGAGAAGCGGCATGGAACCAGTACAAAGATTAACAAAGCTGTCCTAG
TGTAACAAGTGAAAAAGCTCTCCTGTCAGGCCCGCGAATTTCGCCTTCTCTTTACCAGATGATTGATGTTGTGTTTGATA
TTCAGGTTTGTTTAGAGGGTGAATGTACAGATGAGTTTAGGAAACAGGAAAAATGAGGTGCTAAGAAAGTGAAACATGGT
TTAATTTCGATTGGTGTAACTGTGTGCGTTTGATCTTCGCCGATCTGTGAATGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38188.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis