Browse Element(s) Details


Os.38212.1.S1_at

Description gb:AK065089.1
DB_XREF= gi:32975107
TID=Os.38212.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001L21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001L21, full insert sequence.
FL= gb:AK065089.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g528106/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52760OsAffx.2319.1.S1_at11/111+30678677..30685105expressed protein
LOC_Os01g52760Os.33039.1.S1_at10/111+30678677..30685105expressed protein
LOC_Os01g52760Os.54724.1.S1_at3/111+30678677..30685105expressed protein
LOC_Os01g52770Os.28229.2.S1_x_at11/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52770Os.28229.1.S1_at5/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52770Os.51561.1.S1_x_at1/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52780Os.41805.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52780Os.37148.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52790Os.10346.1.S1_at11/111+30699052..30703760Cytochrome P450 family protein, expressed
LOC_Os01g52800NANA1+30705033..30705832Cytochrome P450 72A1, putative
LOC_Os01g52810Os.38212.1.S1_at6/111+30707676..30710005expressed protein
LOC_Os01g52810Os.52501.1.S1_x_at5/111+30707676..30710005expressed protein
LOC_Os01g52820OsAffx.21521.1.S1_at10/111+30712833..30713207hypothetical protein
LOC_Os01g52830Os.941.1.S1_at11/111+30713755..30714721secreted protein, putative, expressed
LOC_Os01g52840Os.34131.1.S1_s_at10/111+30716516..30718652hAT family dimerisation domain containing protein
LOC_Os01g52850NANA1+30719608..30720030hypothetical protein
LOC_Os01g52864Os.942.1.S1_at11/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864OsAffx.2320.1.S1_at7/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864Os.53962.1.S1_at1/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52880OsAffx.2321.2.S1_s_at11/111+30733907..30735353Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38212.1.S1_at--937--10251Chr01:30709454..30709478 (25 bp)
TTTGAGGACTTCATGGGCATCCTAC
LOC_Os01g52810
Os.38212.1.S1_at--866--10531Chr01:30709463..30709487 (25 bp)
TTCATGGGCATCCTACGAGTTCCTA
LOC_Os01g52810
Os.38212.1.S1_at--645--2531Chr01:30709588..30709611 (24 bp)
AACTACATCATTCAGATTCCACAGA
LOC_Os01g52810
Os.38212.1.S1_at--440--6291Chr01:30709758..30709782 (25 bp)
GATGTTGATGGAGCTACTGCCTGAC
LOC_Os01g52810
Os.38212.1.S1_at--665--1571Chr01:30709769..30709793 (25 bp)
AGCTACTGCCTGACGTTGATGTGCT
LOC_Os01g52810
Os.38212.1.S1_at--768--6551Chr01:30709979..30710003 (25 bp)
GATTATGTTGTTGATCTTTCTTTAT
LOC_Os01g52810
Os.38212.1.S1_at--808--10231Chr01:30710043..30710067 (25 bp)
TATTGGGATCTCAGTATAGCTTTAA
NONE
Os.38212.1.S1_at--228--3491Chr01:30710109..30710133 (25 bp)
CAGGACATCTATTTCATCATTACAA
NONE
Os.38212.1.S1_at--1038--131Chr01:30710127..30710151 (25 bp)
ATTACAAACCATTCCAAATCAACGG
NONE
Os.38212.1.S1_at--118--391Chr01:30710197..30710221 (25 bp)
ATCACTTGGCAATTGTAGTCATGGC
NONE
Os.38212.1.S1_at--603--6932Chr09:16965802..16965826 (25 bp)
GTAGTCATGGCCACTTGGGCAATTT
NONE
Target Sequence 
TTTGAGGACTTCATGGGCATCCTACGAGTTCCTACACCGGATATTAACTACATCATTCAGATTCCACAGANGAGCTGCAT
TCCTGGTTCTGCTGTAACTGAGGGTTGATCTGCCTGATGTTGATGGAGCTACTGCCTGACGTTGATGTGCTGTTCAGCTG
TTGCTGTTATGAAGTGGGAAGCTCTATTACCAAATGATACCTTTCTTATTGTTGCCTCCTCTGATGGCGTATTTGAGAAA
GTGACTATGCAGGATGTCTGTGATCTGATGTTGTACGTGAAACTTGGTGTTAAGCAAGAATTAGGATCCTTTGCATTAAC
ACAACAGAATTTGGCAGATTATGTTGTTGATCTTTCTTTATAGATAGGGACAACAGACAATGTAGAAGCTGTGATTGTTC
TATTGGGATCTCAGTATAGCTTTAAAGTTACACTAAAAGATTGGTACATATGCTTGAAGAAAATTTCAGGACATCTATTT
CATCATTACAAACCATTCCAAATCAACGGAAGTCGGGTAGGTTTAATGTACAAAAACTGAGTTTTTTTATCGCAATCACT
TGGCAATTGTAGTCATGGCCACTTGGGCAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis