Browse Element(s) Details


Os.38273.2.S1_x_at

Description gb:AK120707.1
DB_XREF= gi:37990330
TID=Os.38273.2
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001D08, full insert sequence.
FL= gb:AK120707.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2441411/11expressed protein
LOC_Os04g176809/11expressed protein
LOC_Os09g042902/11expressed protein
LOC_Os05g256001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24370NANA4+13948063..13955445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24380NANA4+13956780..13957436retrotransposon, putative, centromere-specific
LOC_Os04g24390NANA4+13959475..13962175retrotransposon protein, putative, unclassified
LOC_Os04g24400NANA4+13962813..13963322retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24410Os.35543.1.S1_at11/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.26050.3.A1_at11/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.32229.1.S1_x_at9/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.28576.1.S1_s_at4/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.32306.1.S1_x_at1/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24414Os.38273.2.S1_at11/114+13979041..13981278expressed protein
LOC_Os04g24414Os.15576.1.S1_at11/114+13979041..13981278expressed protein
LOC_Os04g24414Os.38273.2.S1_x_at11/114+13979041..13981278expressed protein
LOC_Os04g24420Os.38273.1.S1_at11/114+13980253..13981553expressed protein
LOC_Os04g24430Os.48521.1.S1_at8/114+13983603..13988518Sucrose synthase 2, putative, expressed
LOC_Os04g24430Os.46781.1.S1_at2/114+13983603..13988518Sucrose synthase 2, putative, expressed
LOC_Os04g24440NANA4+13990348..13993368retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g24450OsAffx.31892.5.S1_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24450OsAffx.24431.1.S1_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24450OsAffx.31892.5.S1_x_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24460OsAffx.26128.1.S1_at11/114+14003269..14004470phytase, putative
LOC_Os04g24460OsAffx.28544.2.S1_x_at1/114+14003269..14004470phytase, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38273.2.S1_x_at--356--10293Chr09:2281911..2281935 (25 bp)
TTTCGCAGTGATCAAAACCATGGTT
LOC_Os09g04290
Os.38273.2.S1_x_at--51--6392Chr04:9663783..9663807 (25 bp)
GATCGAGGTCCTAATGGATGCCAGT
LOC_Os04g17680
Os.38273.2.S1_x_at--184--2132Chr04:9663820..9663844 (25 bp)
ACAGGAATGCTGTCTTGTTCGCCGT
LOC_Os04g17680
Os.38273.2.S1_x_at--60--4253Chr09:2282149..2282173 (25 bp)
CCGTCCTTAATCTGGCCTGAAATGC
LOC_Os09g04290
Os.38273.2.S1_x_at--726--8971Chr04:13979441..13979695 (25 bp)
TGAACTGAACTGTAGCACCTTCTCG
LOC_Os04g24414
Os.38273.2.S1_x_at--256--8192Chr04:9664140..9664164 (25 bp)
GGAAGCGGATACACTTGAGCACAAG
LOC_Os04g17680
Os.38273.2.S1_x_at--978--6472Chr04:9664175..9664199 (25 bp)
GATACGATCTACAATACCTGACGGT
LOC_Os04g17680
Os.38273.2.S1_x_at--287--8912Chr04:9664199..9664223 (25 bp)
TGACGAGAGGTACGCACCCACTTGA
LOC_Os04g17680
Os.38273.2.S1_x_at--662--6533Chr05:14802573..14802592 (20 bp)
GATTTCTGCGTCCTCAGCGGAATAA
LOC_Os05g25600
Os.38273.2.S1_x_at--505--10532Chr04:9664283..9664307 (25 bp)
TTCAGAGCCCTGAGTGTCATGTTCT
LOC_Os04g17680
Os.38273.2.S1_x_at--959--6872Chr04:9664480..9664504 (25 bp)
GTATTCTCAGAAATATGCTCCCATC
NONE
Target Sequence 
TTTCGCAGTGATCAAAACCATGGTTGCATGATCAGGAAGCTGGGAAAAGGAACAGGAGGATATATTGCATACAGTTAAGT
GATCGAGGTCCTAATGGATGCCAGTGGTGATGGCGCCACAGGAATGCTGTCTTGTTCGCCGTCCTTAATCTGGCCTGAAA
TGCATGAACTGAACTGTAGCACCTTCTCGCCGACATGGTCGCAGCAAGGAAGCGGATACACTTGAGCACAAGGTGCGGGA
CAGATACGATCTACAATACCTGACGGTGACGAGAGGTACGCACCCACTTGATTTCTGCGTCCTCAGCGGAATAAAAGATG
GACCGAGAATTTTCGTTCAGAGAAATTATATTCAGAGCCCTGAGTGTCATGTTCTCTCGATTTGCATGTGCAGCCCTTTT
CATATTTTTTTAGTTTGATCGGCTGGACAATTTGATACTTACAGTTGTGTCAAAAGCTCTGAAACGTTACGAAAATTATG
GTGCTTATAGACATCATGCTCTAAATGTCAATTAGAAATATGCCNTTTGCAATTTTGCATGTGTGCAGTATTCTCAGAAA
TATGCTCCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38273.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis