Browse Element(s) Details


Os.3828.1.S1_at

Description gb:AK058731.1
DB_XREF= gi:32968749
TID=Os.3828.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.3828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-F10, full insert sequence.
FL= gb:AK058731.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1347011/11KH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13430Os.3822.2.S2_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.2.S1_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.1.S1_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13440Os.43374.1.S1_at11/111+7481712..7482527expressed protein
LOC_Os01g13450OsAffx.11034.2.S1_s_at11/111+7486035..7486751hypothetical protein
LOC_Os01g13460Os.3825.1.S1_at11/111+7491859..7495193Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13460Os.45983.1.S1_x_at11/111+7491859..7495193Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13470Os.3828.1.S1_at11/111+7503057..7508570KH domain containing protein, expressed
LOC_Os01g13470Os.3828.2.S1_x_at11/111+7503057..7508570KH domain containing protein, expressed
LOC_Os01g13480Os.36648.1.S1_x_at10/111+7514014..7515543Glutaredoxin family protein, expressed
LOC_Os01g13490Os.24496.1.S1_at11/111+7516419..7521235expressed protein
LOC_Os01g13490OsAffx.23226.1.S1_x_at1/111+7516419..7521235expressed protein
LOC_Os01g13500OsAffx.23226.1.S1_x_at4/111+7525451..7526938hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3828.1.S1_at--598--7231Chr01:7507976..7508000 (25 bp)
GTCGCAGATCCGATGGGTAATGCAA
LOC_Os01g13470
Os.3828.1.S1_at--403--4871Chr01:7508009..7508033 (25 bp)
GCTATTTTGATATCCGGCACACCAG
LOC_Os01g13470
Os.3828.1.S1_at--545--1371Chr01:7508032..7508056 (25 bp)
AGACCAGATGCATGCAGCCCGAAGT
LOC_Os01g13470
Os.3828.1.S1_at--646--5011Chr01:7508045..7508069 (25 bp)
GCAGCCCGAAGTCTTATTCAAGCAT
LOC_Os01g13470
Os.3828.1.S1_at--738--2711Chr01:7508064..7508088 (25 bp)
AAGCATTTGTCCTAAGTGAACCACT
LOC_Os01g13470
Os.3828.1.S1_at--462--311Chr01:7508107..7508131 (25 bp)
ATACCTGAAGGTAGTGACCATGGAC
LOC_Os01g13470
Os.3828.1.S1_at--1025--3511Chr01:7508275..7508299 (25 bp)
CATGATGGATCTTTGCTAGGTTCTT
LOC_Os01g13470
Os.3828.1.S1_at--731--2251Chr01:7508304..7508328 (25 bp)
AAATATCCCAGTCTTTTCATTGTGA
LOC_Os01g13470
Os.3828.1.S1_at--366--7891Chr01:7508343..7508367 (25 bp)
GGTTAGCTGCACAGTTCTCTTTTCA
LOC_Os01g13470
Os.3828.1.S1_at--400--4551Chr01:7508421..7508445 (25 bp)
GCCCATCATGTTGATTTTCTAAACT
LOC_Os01g13470
Os.3828.1.S1_at--139--5551Chr01:7508455..7508479 (25 bp)
GAAACTAGCCTAATTATTGCATTTT
LOC_Os01g13470
Target Sequence 
GTCGCAGATCCGATGGGTAATGCAATGGACACTGCTATTTTGATATCCGGCACACCAGACCAGATGCATGCAGCCCGAAG
TCTTATTCAAGCATTTGTCCTAAGTGAACCACTAGCCCCCTGATATTTCAAATACCTGAAGGTAGTGACCATGGACTGGT
TGAGTTGCTGGTGATGATGATTGTGTGGGCAATGAAGCTAGTGACCTTATGTGTTCATATTTATGAATATGCNTGCCCTG
TTTGCAGACTTGCATATGGTCGAAGAGGCTAATTATGCTGAATAGTGACTAAATTTCAACATGATGGATCTTTGCTAGGT
TCTTTGGAAAATATCCCAGTCTTTTCATTGTGAGATAGAAATGCTATGGTTAGCTGCACAGTTCTCTTTTCATGCAAGCT
ATATGCTTGGAGCTTGAAAGCTTCAAACTTTTTTTTGTATGATGAGCCCATCATGTTGATTTTCTAAACTTATATTAAGG
AAACTAGCCTAATTATTGCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis