Browse Element(s) Details


Os.38312.1.S1_at

Description gb:AK066922.1
DB_XREF= gi:32976940
TID=Os.38312.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0019D06.6 (P0019D06.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013090N09, full insert sequence.
FL= gb:AK066922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0486011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04814Os.7385.2.S1_a_at11/111+2212433..2219616Vacuolar protein sorting-associated protein VPS4, putative, expressed
LOC_Os01g04814OsAffx.23116.2.S1_at11/111+2212433..2219616Vacuolar protein sorting-associated protein VPS4, putative, expressed
LOC_Os01g04830OsAffx.22787.1.S1_at11/111+2221485..2221862hypothetical protein
LOC_Os01g04840OsAffx.23116.1.S1_at10/111+2222802..2226328Vacuolar sorting protein 4b, putative
LOC_Os01g04850OsAffx.30457.3.S1_s_at1/111+2230438..2231310retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g04860Os.38312.2.S1_x_at11/111+2242534..2247237expressed protein
LOC_Os01g04860Os.38312.1.S1_at11/111+2242534..2247237expressed protein
LOC_Os01g04870Os.28010.1.S1_at10/111+2247622..2251875transducin family protein, putative, expressed
LOC_Os01g04880Os.5236.1.S1_at11/111+2258287..2263067expressed protein
LOC_Os01g04900Os.27577.1.S1_at11/111+2263083..2267853peptidase M50 family protein, putative, expressed
LOC_Os01g04910Os.1617.1.S1_at11/111+2267965..2270558My019 protein, putative, expressed
LOC_Os01g04920Os.11870.1.S1_at11/111+2271958..2275662glycosyl transferase, group 1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38312.1.S1_at--840--3211Chr01:2247124..2247148 (25 bp)
CAAGAGGTGTAAGATGACAATGCCA
LOC_Os01g04860
Os.38312.1.S1_at--801--6311Chr01:2247136..2247160 (25 bp)
GATGACAATGCCAACTAACTAATCC
LOC_Os01g04860
Os.38312.1.S1_at--670--4391Chr01:2247145..2247169 (25 bp)
GCCAACTAACTAATCCATTCTACTC
LOC_Os01g04860
Os.38312.1.S1_at--675--2531Chr01:2247148..2247172 (25 bp)
AACTAACTAATCCATTCTACTCCCT
LOC_Os01g04860
Os.38312.1.S1_at--181--9771Chr01:2247155..2247179 (25 bp)
TAATCCATTCTACTCCCTCCGTGTT
LOC_Os01g04860
Os.38312.1.S1_at--509--871Chr01:2247192..2247216 (25 bp)
AGGCGTATTGACTTTTGGACATGGC
LOC_Os01g04860
Os.38312.1.S1_at--774--6871Chr01:2247196..2247220 (25 bp)
GTATTGACTTTTGGACATGGCGTTA
LOC_Os01g04860
Os.38312.1.S1_at--1132--10711Chr01:2247199..2247223 (25 bp)
TTGACTTTTGGACATGGCGTTAGAC
LOC_Os01g04860
Os.38312.1.S1_at--1128--5671Chr01:2247201..2247225 (25 bp)
GACTTTTGGACATGGCGTTAGACCA
LOC_Os01g04860
Os.38312.1.S1_at--979--8111Chr01:2247208..2247232 (25 bp)
GGACATGGCGTTAGACCATTCATCT
LOC_Os01g04860
Os.38312.1.S1_at--1091--8471Chr01:2247213..2247237 (25 bp)
TGGCGTTAGACCATTCATCTCATGC
LOC_Os01g04860
Target Sequence 
CAAGAGGTGTAAGATGACAATGCCAACTAACTAATCCATTCTACTCCCTCCGTGTTTTTTAAATGTAAAGGCGTATTGAC
TTTTGGACATGGCGTTAGACCATTCATCTCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis