Browse Element(s) Details


Os.38312.2.S1_x_at

Description gb:NM_184310.1
DB_XREF= gi:34895699
GEN=P0019D06.6
TID=Os.38312.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0019D06.6 (P0019D06.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0019D06.6 (P0019D06.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0486011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04814Os.7385.2.S1_a_at11/111+2212433..2219616Vacuolar protein sorting-associated protein VPS4, putative, expressed
LOC_Os01g04814OsAffx.23116.2.S1_at11/111+2212433..2219616Vacuolar protein sorting-associated protein VPS4, putative, expressed
LOC_Os01g04830OsAffx.22787.1.S1_at11/111+2221485..2221862hypothetical protein
LOC_Os01g04840OsAffx.23116.1.S1_at10/111+2222802..2226328Vacuolar sorting protein 4b, putative
LOC_Os01g04850OsAffx.30457.3.S1_s_at1/111+2230438..2231310retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g04860Os.38312.2.S1_x_at11/111+2242534..2247237expressed protein
LOC_Os01g04860Os.38312.1.S1_at11/111+2242534..2247237expressed protein
LOC_Os01g04870Os.28010.1.S1_at10/111+2247622..2251875transducin family protein, putative, expressed
LOC_Os01g04880Os.5236.1.S1_at11/111+2258287..2263067expressed protein
LOC_Os01g04900Os.27577.1.S1_at11/111+2263083..2267853peptidase M50 family protein, putative, expressed
LOC_Os01g04910Os.1617.1.S1_at11/111+2267965..2270558My019 protein, putative, expressed
LOC_Os01g04920Os.11870.1.S1_at11/111+2271958..2275662glycosyl transferase, group 1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38312.2.S1_x_at--659--2471Chr01:2245712..2245736 (25 bp)
AACACTTGCTTTGACATGGCTTGGT
LOC_Os01g04860
Os.38312.2.S1_x_at--841--2091Chr01:2245748..2245772 (25 bp)
ACATCTTTGGTTTCGCTATCAGTCC
LOC_Os01g04860
Os.38312.2.S1_x_at--77--10171Chr01:2245764..2245788 (25 bp)
TATCAGTCCCTATCAGTTCTCAAAT
LOC_Os01g04860
Os.38312.2.S1_x_at--182--411Chr01:2245775..2245799 (25 bp)
ATCAGTTCTCAAATTCCGCACAGTA
LOC_Os01g04860
Os.38312.2.S1_x_at--1156--2371Chr01:2245939..2245963 (25 bp)
AAACGCGCTCGGATTCTCGTGAGAT
LOC_Os01g04860
Os.38312.2.S1_x_at--5--6671Chr01:2245969..2245990 (22 bp)
GTTGCAAAGCACACAGTTCCTGATT
LOC_Os01g04860
Os.38312.2.S1_x_at--141--571Chr01:2246762..2246786 (25 bp)
ATCCTCTTTCTCAATCCGATTGGAA
LOC_Os01g04860
Os.38312.2.S1_x_at--1154--8411Chr01:2246789..2246813 (25 bp)
GGCCGAGCAGCATTTTTTGTTACAT
LOC_Os01g04860
Os.38312.2.S1_x_at--1093--5151Chr01:2246902..2246926 (25 bp)
GCAACGAGCATGTCAGTCCTCAGGA
LOC_Os01g04860
Os.38312.2.S1_x_at--831--5011Chr01:2246967..2246991 (25 bp)
GCAGGATGATGTTTTCTCTTGGCTA
LOC_Os01g04860
Os.38312.2.S1_x_at--966--1631Chr01:2246998..2247022 (25 bp)
AGCGTTCTTGCGTTGGAGCACGGAT
LOC_Os01g04860
Target Sequence 
AACACTTGCTTTGACATGGCTTGGTGTCCGTCTTCTACATCTTTGGTTTCGCTATCAGTCCCTATCAGTTCTCAAATTCC
GCACAGTAAACTTGAAACGCGCTCGGATTCTCGTGAGATCACACGTTGCAAAGCACACAGTTCCTGATTATGTGACTTGC
AACGAGGAGGAGAATATTTTAACATGGGAAAGATTCTTGCATCCACAAATTTCTTTTGGTGTTCCCATGGAGAGAATGCT
TGGTGAAGAGGAATCCAGTGACGTGGTGGATAGACTATTGAAGTTGTACAGAAATGAGAAATACATCCTCTTTCTCAATC
CGATTGGAACAGGCCGAGCAGCATTTTTTGTTACATTCAAGGAGGCTGCAACGAGCATGTCAGTCCTCAGGAGCCTATGG
CAAGCGCATTGGCTTGACAAAAATCAGCTAAGGCAGGATGATGTTTTCTCTTGGCTAGAGGAGAGCGTTCTTGCGTTGGA
GCACGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38312.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis