Browse Element(s) Details


Os.38395.4.S1_x_at

Description gb:NM_190619.1
DB_XREF= gi:34908321
GEN=P0529H11.14
TID=Os.38395.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38395 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative mutator-like transposase (P0529H11.14), mRNA.
PROD=putative mutator-like transposase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6317011/11transposon protein, putative, Mutator sub-class
LOC_Os08g139709/11retrotransposon protein, putative, unclassified
LOC_Os01g239309/11transposon protein, putative, Mutator sub-class
LOC_Os03g451409/11transposon protein, putative, Mutator sub-class
LOC_Os01g198949/11transposon protein, putative, Mutator sub-class
LOC_Os01g362509/11transposon protein, putative, Mutator sub-class
LOC_Os11g136409/11transposon protein, putative, Mutator sub-class
LOC_Os02g306809/11transposon protein, putative, Mutator sub-class
LOC_Os03g030609/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g554509/11transposon protein, putative, Mutator sub-class
LOC_Os05g169108/11transposon protein, putative, Mutator sub-class
LOC_Os01g416208/11transposon protein, putative, Mutator sub-class
LOC_Os01g362608/11Transposable element protein, putative, MuDR
LOC_Os04g418408/11transposon protein, putative, Mutator sub-class
LOC_Os04g247308/11transposon protein, putative, Mutator sub-class
LOC_Os11g151708/11transposon protein, putative, Mutator sub-class
LOC_Os03g057907/11transposon protein, putative, Mutator sub-class
LOC_Os09g172007/11transposon protein, putative, Mutator sub-class
LOC_Os04g023707/11transposon protein, putative, Mutator sub-class
LOC_Os03g021406/11transposon protein, putative, Mutator sub-class
LOC_Os05g397806/11transposon protein, putative, Mutator sub-class
LOC_Os04g024205/11transposon protein, putative, Mutator sub-class
LOC_Os04g530905/11SWIM zinc finger family protein
LOC_Os07g226104/11transposon protein, putative, Mutator sub-class
LOC_Os03g598943/11Transposable element protein, putative, MuDR
LOC_Os12g309003/11Transposable element protein, putative, MuDR
LOC_Os02g242802/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g202402/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63140NANA1+36912147..36913010retrotransposon protein, putative, unclassified
LOC_Os01g63150Os.42422.1.S1_at11/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.23640.3.S1_x_at6/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.22659.1.A1_at2/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.23640.1.S1_x_at1/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63160Os.30620.1.S1_at11/111+36933384..36934984Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g63170Os.38395.4.S1_x_at11/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.3.S1_x_at10/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.1.S1_at8/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.2.S1_x_at8/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63180Os.42421.1.S1_at11/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63180Os.18847.1.S1_at6/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63190Os.14830.1.S1_a_at11/111+36949678..36954511Multicopper oxidase family protein, expressed
LOC_Os01g63200Os.42420.1.S1_at11/111+36961180..36963829Multicopper oxidase family protein, expressed
LOC_Os01g63210Os.11253.1.S1_at11/111+36966475..36967417SOUL heme-binding family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38395.4.S1_x_at--904--53524Chr11:8542293..8542317 (25 bp)
GAAGATGTCACACAGTCCGTGCCAT
LOC_Os11g15170
Os.38395.4.S1_x_at--127--42523Chr11:8542309..8542333 (25 bp)
CCGTGCCATGGCCAGATTTACATAG
LOC_Os11g15170
Os.38395.4.S1_x_at--943--7951Chr01:36939371..36939395 (25 bp)
GGATCGTTTGACCACTATACACATG
LOC_Os01g63170
Os.38395.4.S1_x_at--1042--24111Chr04:32763189..32763213 (25 bp)
AAAACCCATAGTTGCCAGACAGGAG
LOC_Os04g55450
Os.38395.4.S1_x_at--611--80124Chr11:8542532..8542556 (25 bp)
GGAGGGACTTGAACCCATTCCTAAT
LOC_Os11g15170
Os.38395.4.S1_x_at--1048--53724Chr11:8542557..8542581 (25 bp)
GAAGCACCAAGTATTACTCGGCGCA
LOC_Os11g15170
Os.38395.4.S1_x_at--691--131Chr01:36939477..36939501 (25 bp)
ATTACTCGGCGCAGGAAACGTGGAC
LOC_Os01g63170
Os.38395.4.S1_x_at--698--85325Chr11:8542594..8542613 (20 bp)
TGGACGGGCCACGAAGTGCTTCACG
LOC_Os11g15170
Os.38395.4.S1_x_at--306--89922Chr11:8542723..8542747 (25 bp)
TGAAGAATACACGACCTCTACCACT
LOC_Os11g15170
Os.38395.4.S1_x_at--163--99924Chr11:8542741..8542765 (25 bp)
TACCACTTGTTGCTATCCTGGAGGG
LOC_Os11g15170
Os.38395.4.S1_x_at--483--68722Chr11:8542802..8542825 (24 bp)
GTATTCCATGGCTAGTCTGAACCTC
LOC_Os11g15170
Target Sequence 
GAAGATGTCACACAGTCCGTGCCATGGCCAGATTTACATAGCAGATGGTGCATGCGACATTTTGGGGCTAATTTTTATAG
ACAATTCAGGAGTAAGAGATTGATGGACCTGTTCAAGAAGTTATGCAAGCAGAATCAACAAAGAAAGTTTGATGCCATAT
GGGAGCAACTGGATCGTTTGACCACTATACACATGGAAGAGGTTAGGAAAAAACCCATAGTTGCCAGACAGGAGGAGCCG
GAGGGACTTGAACCCATTCCTAATGAAGCACCAAGTATTACTCGGCGCAGGAAACGTGGACGGGCCACGAAGTGCTTCAC
GGAGTGGGTAGAATTTGAGCCAAGGGAGAAATGGTCGTTGTTGTACGATACAGATGGATCGAGGTATGGTGTGATGACAA
CAAATCTTGCTGAAGTGTATAATTGGGTTATGAAGAATACACGACCTCTACCACTTGTTGCTATCCTGGAGGGCATCACG
AGGGGTACACAGAAGTATCTCTGTAAAAGGTATTCCATGGCTAGTCTGAACCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38395.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis