Browse Element(s) Details


Os.3850.1.S1_a_at

Description gb:AK065001.1
DB_XREF= gi:32975019
TID=Os.3850.1
CNT=23
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.3850 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0038J17.24 (OSJNBa0038J17.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001E04, full insert sequence.
FL= gb:AK065001.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1165011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11590Os.18774.1.S1_s_at11/111+6250523..62540003-oxoacyl-synthase, putative, expressed
LOC_Os01g11590Os.43493.1.S1_at2/111+6250523..62540003-oxoacyl-synthase, putative, expressed
LOC_Os01g11600NANA1+6254717..6255066hypothetical protein
LOC_Os01g11609NANA1+6258125..6258316NA
LOC_Os01g11620Os.43491.1.S1_x_at11/111+6264242..6267574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11629NANA1+6272410..6272696NA
LOC_Os01g11640OsAffx.11011.1.S1_at11/111+6274280..6274516hypothetical protein
LOC_Os01g11650Os.3850.3.S1_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.3850.1.S1_a_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.54974.1.S1_x_at1/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11660Os.33387.1.S1_at11/111+6285167..6289103GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11670Os.45963.1.S1_x_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11670Os.45963.1.S1_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11680OsAffx.25108.4.S1_s_at11/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.25108.1.S1_x_at7/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.6420.1.S1_at1/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11690OsAffx.22111.1.S1_x_at4/111+6300364..6300624hypothetical protein
LOC_Os01g11700Os.32925.2.S1_x_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.2.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.1.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3850.1.S1_a_at--724--8911Chr01:6279816..6279837 (22 bp)
TACGGGTTTTTGAGGCAGACGCCGC
LOC_Os01g11650
Os.3850.1.S1_a_at--1088--2511Chr01:6279873..6279897 (25 bp)
AACTTCAACCTGACGTCCAAGTGCG
LOC_Os01g11650
Os.3850.1.S1_a_at--377--1872Chr01:6279922..6279946 (25 bp)
ACGACCCGTCGAACCACTGGAGCTG
LOC_Os01g11650
Os.3850.1.S1_a_at--447--4171Chr01:6280038..6280062 (25 bp)
CGCCACCACTGATCGATCGAAAACA
LOC_Os01g11650
Os.3850.1.S1_a_at--829--2171Chr01:6280060..6280084 (25 bp)
ACACGATCGGTTTGTGATCCACTCG
LOC_Os01g11650
Os.3850.1.S1_a_at--212--6371Chr01:6280075..6280099 (25 bp)
GATCCACTCGTTCGTTTGCATATAT
LOC_Os01g11650
Os.3850.1.S1_a_at--1119--3291Chr01:6280125..6280149 (25 bp)
CACACACCTTCATATGCACTGGAGA
LOC_Os01g11650
Os.3850.1.S1_a_at--247--6271Chr01:6280238..6280262 (25 bp)
GATGTGTTGTAGTTTCATTCATGTA
LOC_Os01g11650
Os.3850.1.S1_a_at--1147--10811Chr01:6280277..6280301 (25 bp)
TTGTGTATTTCGTTTGTTGGTCCTT
LOC_Os01g11650
Os.3850.1.S1_a_at--1092--9352Chr01:6280286..6280310 (25 bp)
TCGTTTGTTGGTCCTTGGTAGAGAA
LOC_Os01g11650
Os.3850.1.S1_a_at--272--6271Chr01:6280321..6280345 (25 bp)
GATGTAATTCCTATTTCTTGAGAAA
LOC_Os01g11650
Target Sequence 
TACGGGTTTTTGAGGCAGACGCCGCGGGCGTGCTGCGGGGCTCCGGGGGTCGGGGAGTACAACTTCAACCTGACGTCCAA
GTGCGGGGACCCGGGGTCGTACGCGTGCGACGACCCGTCGAACCACTGGAGCTGGGACGGCATCCACCTCACCGAGGCGT
CCTACGGCCACATCGCCAAGGGCTGGCTNTACGGCCCGTTCGCCGACCCTCCCATCCTCGAGACCCGCCACCACTGATCG
ATCGAAAACACGATCGGTTTGTGATCCACTCGTTCGTTTGCATATATGACAAGCAGACACACACCACATACACACACACC
TTCATATGCACTGGAGATGTGAAGGATAGCGAAAGGGGCCGGACAGGCAGAAGAACAGAGAATGTGATGGTTAATTTGTT
CAGATTAATTAGATGGTTGGTTGGGGATGTGTTGTAGTTTCATTCATGTAAGAAGCGTTTTGGTTTGTGTATTTCGTTTG
TTGGTCCTTGGTAGAGAAAGAGAGAGTAGATGTAATTCCTATTTCTTGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3850.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis