Browse Element(s) Details


Os.38994.1.A1_at

Description gb:AA753750
DB_XREF= gi:2799225
DB_XREF=96BS0949
CLONE=96BS0949
TID=Os.38994.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.38994 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_191048.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2964011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29600Os.26381.1.S1_x_at11/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29600Os.26381.5.S1_at1/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29610Os.12013.3.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_a_at9/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29620Os.137.1.S1_at11/117+17408334..17412155Serine carboxypeptidase-like precursor, putative, expressed
LOC_Os07g29630Os.28775.1.S1_at11/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.57183.1.S1_at10/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.51700.1.S1_at1/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29640Os.22559.1.S1_at11/117+17424704..17427721expressed protein
LOC_Os07g29640Os.38994.1.A1_at11/117+17424704..17427721expressed protein
LOC_Os07g29650Os.35344.3.S1_x_at7/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650Os.35344.18.S1_x_at6/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650OsAffx.22940.5.S1_x_at3/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29660OsAffx.22317.1.S1_at11/117+17437850..17438140hypothetical protein
LOC_Os07g29670NANA7+17438877..17442520hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_x_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.28662.1.S1_at10/117+17443413..17448062hypothetical protein
LOC_Os07g29700Os.10046.1.S1_at11/117+17452353..17453549hypothetical protein
LOC_Os07g29700OsAffx.10906.1.S1_at11/117+17452353..17453549hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38994.1.A1_at--1022--8091Chr07:17424854..17424878 (25 bp)
GGACCTCAAGCTCTCAGATGTGTTG
LOC_Os07g29640
Os.38994.1.A1_at--154--3251Chr07:17424848..17424872 (25 bp)
CAAGCTCTCAGATGTGTTGCTATCT
LOC_Os07g29640
Os.38994.1.A1_at--305--6271Chr07:17424838..17424862 (25 bp)
GATGTGTTGCTATCTGCTGAATGAC
LOC_Os07g29640
Os.38994.1.A1_at--1131--6651Chr07:17424833..17424857 (25 bp)
GTTGCTATCTGCTGAATGACCCTAT
LOC_Os07g29640
Os.38994.1.A1_at--167--4871Chr07:17424830..17424854 (25 bp)
GCTATCTGCTGAATGACCCTATGAC
LOC_Os07g29640
Os.38994.1.A1_at--500--9491Chr07:17424826..17424850 (25 bp)
TCTGCTGAATGACCCTATGACATGT
LOC_Os07g29640
Os.38994.1.A1_at--799--5271Chr07:17424820..17424844 (25 bp)
GAATGACCCTATGACATGTAACTGT
LOC_Os07g29640
Os.38994.1.A1_at--531--7031Chr07:17424803..17424827 (25 bp)
GTAACTGTCATAGGTAAAAACTGAA
LOC_Os07g29640
Os.38994.1.A1_at--837--11Chr07:17424766..17424790 (25 bp)
ATTGTTTGTAAACACGGCAACTTCA
LOC_Os07g29640
Os.38994.1.A1_at--439--3591Chr07:17424730..17424754 (25 bp)
CATTTTCTTGAGGTTGAGGTCTCGA
LOC_Os07g29640
Os.38994.1.A1_at--211--10771Chr07:17424717..17424741 (25 bp)
TTGAGGTCTCGAGGAGCATTGGAAA
LOC_Os07g29640
Target Sequence 
GGACCTCAAGCTCTCAGATGTGTTGCTATCTGCTGAATGACCCTATGACATGTAACTGTCATAGGTAAAAACTGAAAGGC
ACATNAACATTGTTTGTAAACACGGCAACTTCACAACAAACATCCATTTTCTTGAGGTTGAGGTCTCGAGGAGCATTGGA
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38994.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis