Browse Element(s) Details


Os.39181.1.A1_at

Description gb:CF278365
DB_XREF= gi:33655751
DB_XREF=14ETL--04-E01.g1
CLONE=14ETL--04-E01
TID=Os.39181.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39181 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g579208/11Cation transporter/ATPase, N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57850Os.11920.1.S1_s_at1/112+35420449..35421472hypothetical protein
LOC_Os02g57860Os.23627.1.A1_at6/112+35425163..35426971F-box domain containing protein, expressed
LOC_Os02g57870Os.23608.1.S1_at11/112+35427793..35429999expressed protein
LOC_Os02g57880Os.23175.1.S1_at2/112+35431872..35433039hypothetical protein
LOC_Os02g57890Os.53591.1.S1_at1/112+35435057..35436739F-box domain containing protein
LOC_Os02g57890OsAffx.3098.1.S1_at1/112+35435057..35436739F-box domain containing protein
LOC_Os02g57900OsAffx.12685.1.S1_at9/112+35437471..35441000hypothetical protein
LOC_Os02g57900Os.53104.1.S1_at2/112+35437471..35441000hypothetical protein
LOC_Os02g57900OsAffx.18815.1.S1_x_at1/112+35437471..35441000hypothetical protein
LOC_Os02g57910Os.23175.1.S1_at11/112+35441874..35444096F-box domain containing protein, expressed
LOC_Os02g57920OsAffx.3097.1.S1_s_at11/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.38248.1.S1_at11/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.12010.1.S1_at10/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.12010.1.S1_x_at10/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920OsAffx.3097.1.S1_x_at9/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.39181.1.A1_at8/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.39181.1.A1_x_at4/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.43072.1.S1_x_at2/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.43072.1.S1_at2/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57930Os.27691.1.S1_x_at4/112+35460748..35466204retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g57940Os.53591.1.S1_at11/112+35476075..35478087F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015992biological_processproton transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39181.1.A1_at--712--7551Chr02:35455002..35455026 (25 bp)
GGGCCAAGTAATTTTGAACCGCTTG
LOC_Os02g57920
Os.39181.1.A1_at--1065--1151Chr02:35454996..35455020 (25 bp)
AGTAATTTTGAACCGCTTGTAGTAG
LOC_Os02g57920
Os.39181.1.A1_at--410--8971Chr02:35454988..35455012 (25 bp)
TGAACCGCTTGTAGTAGGGACGTTT
LOC_Os02g57920
Os.39181.1.A1_at--458--3271Chr02:35454932..35454956 (25 bp)
CTAAGTTGTAACTATAAGGTAGCGA
LOC_Os02g57920
Os.39181.1.A1_at--347--10451NONE
TTAGTTGAACCACGCCACTGGGTTA
NONE
Os.39181.1.A1_at--863--10731NONE
TTGAACCACGCCACTGGGTTACCCA
NONE
Os.39181.1.A1_at--629--3891NONE
CTGGGTTACCCACGAAGACAATTCA
NONE
Os.39181.1.A1_at--490--6771Chr02:35454885..35454909 (25 bp)
GTTACCCACGAAGACAATTCAGCAG
LOC_Os02g57920
Os.39181.1.A1_at--210--4371Chr02:35454880..35454904 (25 bp)
CCACGAAGACAATTCAGCAGCAGTA
LOC_Os02g57920
Os.39181.1.A1_at--819--5591Chr02:35454873..35454897 (25 bp)
GACAATTCAGCAGCAGTAACAATCA
LOC_Os02g57920
Os.39181.1.A1_at--406--131Chr02:35454869..35454893 (25 bp)
ATTCAGCAGCAGTAACAATCATTTG
LOC_Os02g57920
Target Sequence 
GGGCCAAGTAATTTTGAACCGCTTGTAGTAGGGACGTTTTTTGTTNTATGNGGTTGAGTTTTGAACATNCCTAAGTTGTA
ACTATAAGGTAGCGANTTAGTTGAACCACGCCACTGGGTTACCCACGAAGACAATTCAGCAGCAGTAACAATCATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39181.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis