Browse Element(s) Details


Os.40207.1.A1_s_at

Description gb:CF331344
DB_XREF= gi:33810907
DB_XREF=NACL--07-G22.g1
CLONE=NACL--07-G22
TID=Os.40207.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.40207 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0349011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03450Os.48037.1.A1_x_at11/115+1432746..1435269Protein kinase domain containing protein, expressed
LOC_Os05g03450Os.48037.1.A1_at11/115+1432746..1435269Protein kinase domain containing protein, expressed
LOC_Os05g03460OsAffx.14525.1.S1_at11/115+1439388..1441806Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g03480Os.28409.20.A1_a_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03480Os.38599.3.S1_a_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03480Os.47660.1.S1_s_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03490Os.51826.1.S1_at11/115+1453312..1455686expressed protein
LOC_Os05g03490Os.40207.1.A1_s_at11/115+1453312..1455686expressed protein
LOC_Os05g03500OsAffx.26716.1.S1_at11/115+1456097..1460716expressed protein
LOC_Os05g03500OsAffx.24223.1.S1_x_at2/115+1456097..1460716expressed protein
LOC_Os05g03510OsAffx.26717.1.S1_at11/115+1462680..1463396hypothetical protein
LOC_Os05g03520OsAffx.14526.1.S1_at11/115+1467821..1469065hypothetical protein
LOC_Os05g03530Os.37285.1.S1_at11/115+1472002..1474581Tetraspanin family protein, expressed
LOC_Os05g03530Os.16146.1.S1_s_at10/115+1472002..1474581Tetraspanin family protein, expressed
LOC_Os05g03540Os.4606.1.S1_at11/115+1475961..1477672expressed protein
LOC_Os05g03550Os.10447.1.S1_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03550Os.53062.1.S2_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03550Os.53062.1.S1_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40207.1.A1_s_at--541--1251Chr05:1455317..1455341 (25 bp)
AGTTGGCTGCAATGGACTAGTGGAA
LOC_Os05g03490
Os.40207.1.A1_s_at--154--8491Chr05:1455320..1455344 (25 bp)
TGGCTGCAATGGACTAGTGGAACTT
LOC_Os05g03490
Os.40207.1.A1_s_at--16--5191Chr05:1455325..1455349 (25 bp)
GCAATGGACTAGTGGAACTTGGCTA
LOC_Os05g03490
Os.40207.1.A1_s_at--871--5471Chr05:1455339..1455363 (25 bp)
GAACTTGGCTAGGTGGTGTTCCTGC
LOC_Os05g03490
Os.40207.1.A1_s_at--273--2071Chr05:1455341..1455365 (25 bp)
ACTTGGCTAGGTGGTGTTCCTGCTG
LOC_Os05g03490
Os.40207.1.A1_s_at--357--10871Chr05:1455343..1455367 (25 bp)
TTGGCTAGGTGGTGTTCCTGCTGAC
LOC_Os05g03490
Os.40207.1.A1_s_at--219--8311Chr05:1455345..1455369 (25 bp)
GGCTAGGTGGTGTTCCTGCTGACTT
LOC_Os05g03490
Os.40207.1.A1_s_at--239--10091Chr05:1455348..1455372 (25 bp)
TAGGTGGTGTTCCTGCTGACTTTAA
LOC_Os05g03490
Os.40207.1.A1_s_at--310--1051Chr05:1455349..1455373 (25 bp)
AGGTGGTGTTCCTGCTGACTTTAAG
LOC_Os05g03490
Os.40207.1.A1_s_at--561--3833Chr05:1455360..1455384 (25 bp)
CTGCTGACTTTAAGGGCCTGTTTGG
LOC_Os05g03490
Os.40207.1.A1_s_at--108--9113Chr05:1455361..1455385 (25 bp)
TGCTGACTTTAAGGGCCTGTTTGGG
LOC_Os05g03490
Target Sequence 
AGTTGGCTGCAATGGACTAGTGGAACTTGGCTAGGTGGTGTTCCTGCTGACTTTAAGGGCCTGTTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40207.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis