Browse Element(s) Details


Os.41074.1.S1_at

Description gb:AK119927.1
DB_XREF= gi:37989550
TID=Os.41074.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.41074 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1074C08.25 (B1074C08.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A01, full insert sequence.
FL= gb:AK119927.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3294411/11transposon protein, putative, Pong sub-class, expressed
LOC_Os01g344103/11transposon protein, putative, Pong sub-class
LOC_Os02g544403/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g32920OsAffx.27907.1.S1_at11/116+19159475..19161686hypothetical protein
LOC_Os06g32930Os.23748.1.A1_at4/116+19180368..19181688hypothetical protein
LOC_Os06g32944Os.41074.1.S1_at11/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32944OsAffx.9060.1.S1_at8/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32944OsAffx.23696.1.S1_x_at1/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32944OsAffx.20956.1.S1_at1/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32960OsAffx.27910.2.S1_x_at11/116+19193461..19194512Peroxidase family protein
LOC_Os06g32970OsAffx.15707.1.S1_at11/116+19194777..19195493Harpin-induced protein 1 containing protein
LOC_Os06g32970OsAffx.15707.1.S1_x_at11/116+19194777..19195493Harpin-induced protein 1 containing protein
LOC_Os06g32980OsAffx.27910.1.S1_at11/116+19198632..19199718Peroxidase family protein
LOC_Os06g32990Os.5905.1.S1_at11/116+19204574..19206122Peroxidase family protein, expressed
LOC_Os06g33000Os.46306.1.S1_x_at2/116+19207856..19210951transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33010NANA6+19214534..19216507retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41074.1.S1_at--849--7193Chr06:19188640..19188664 (25 bp)
GTCGTGATGAACTACTAGAGACTCA
LOC_Os06g32944
Os.41074.1.S1_at--792--2433Chr06:19188583..19188607 (25 bp)
AAAAGTTAGCGCACCTTGCAGCCAT
LOC_Os06g32944
Os.41074.1.S1_at--1078--6773Chr06:19188482..19188506 (25 bp)
GTTAGATCCGAGCATTTGATGGCAT
LOC_Os06g32944
Os.41074.1.S1_at--443--5553Chr06:19188443..19188467 (25 bp)
GAGAAGTTGTTTCCGTAATACTAAG
LOC_Os06g32944
Os.41074.1.S1_at--559--1174Chr06:19186133..19186157 (25 bp)
AGTAATTCGCTGGTGTCATGTAAGA
LOC_Os06g32944
Os.41074.1.S1_at--553--1433Chr06:19186111..19186135 (25 bp)
AGAACACTTGTGTTGTTACCATCTA
LOC_Os06g32944
Os.41074.1.S1_at--221--6634Chr06:19186100..19186124 (25 bp)
GTTGTTACCATCTATTGGCAGTATG
LOC_Os06g32944
Os.41074.1.S1_at--172--6933Chr06:19186080..19186104 (25 bp)
GTATGGATCGTTGTAATGGCCTAAT
LOC_Os06g32944
Os.41074.1.S1_at--1012--2953Chr06:19186066..19186090 (25 bp)
AATGGCCTAATTTCTTTTGTCGAAT
LOC_Os06g32944
Os.41074.1.S1_at--27--7974Chr06:19186031..19186055 (25 bp)
GGATCATTGCAACAGACTAAGTTAT
LOC_Os06g32944
Os.41074.1.S1_at--50--9794Chr06:19186014..19186038 (25 bp)
TAAGTTATTTTGTCGGTCTATGAAT
LOC_Os06g32944
Target Sequence 
GTCGTGATGAACTACTAGAGACTCAGAGGCNTGTTGCTAGTGATAACCTTGAATCAAAAAAGTTAGCGCACCTTGCAGCC
ATGGAGCACAAGGAGGCTGTTATGTTGGAAACATATCGGTCTCTCATGTTACAAGATACAAAAGATATNCCTGATGATGT
TAGATCCGAGCATTTGATGGCATTGAAGTGTATGAGGGAGAAGTTGTTTCCGTAATACTAAGGGACAATGGAAAACTTTG
GTGCTAGCTTTTTGGTGCTTTCTGCTATGGTTTTGAGAGGTAGTGAAGATGCTCAATTTGGAAGGCTGGCAGCTTGTTTT
GGTTCTGCTTGAGAAAGATAATCTAGTTATAAAGTAATTTTTAGTAATTCGCTGGTGTCATGTAAGAACACTTGTGTTGT
TACCATCTATTGGCAGTATGGATCGTTGTAATGGCCTAATTTCTTTTGTCGAATGTTGATGTATGGATCATTGCAACAGA
CTAAGTTATTTTGTCGGTCTATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis