Browse Element(s) Details


Os.4154.1.S1_at

Description gb:D85751.1
DB_XREF= gi:4106693
TID=Os.4154.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.4154 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for cytosolic glutathione reductase (RGRC2), complete cds.
PROD=glutathione reductase
FL= gb:D85751.1 gb:D78136.1 gb:AK100446.1 gb:AK058270.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5685011/11Glutathione reductase, cytosolic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56800OsAffx.24900.1.S1_at10/112+34807723..34808821F-box family protein, putative
LOC_Os02g56810Os.6256.2.S1_at5/112+34811890..34813900F-box domain containing protein, expressed
LOC_Os02g56820OsAffx.12674.1.S1_at11/112+34815478..34819951F-box domain containing protein, expressed
LOC_Os02g56820Os.49877.1.S1_at1/112+34815478..34819951F-box domain containing protein, expressed
LOC_Os02g56830Os.56073.1.S1_at10/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.2.S1_x_at8/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.1.S1_x_at5/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.1.S1_at5/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56840Os.11505.1.S1_at11/112+34827998..34830159F-box domain containing protein, expressed
LOC_Os02g56840Os.56351.1.S1_at1/112+34827998..34830159F-box domain containing protein, expressed
LOC_Os02g56850Os.52324.1.S1_at11/112+34831877..34837982Glutathione reductase, cytosolic, putative, expressed
LOC_Os02g56850Os.4154.1.S1_at11/112+34831877..34837982Glutathione reductase, cytosolic, putative, expressed
LOC_Os02g56860Os.17584.1.S1_at11/112+34847918..34849684Chalcone and stilbene synthases, C-terminal domain containing protein, expressed
LOC_Os02g56870OsAffx.12675.1.S1_at11/112+34855907..34856271hypothetical protein
LOC_Os02g56880Os.51812.1.S1_at11/112+34856686..34867013Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os02g56880OsAffx.1264.1.S1_x_at1/112+34856686..34867013Transcriptional corepressor LEUNIG, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006749biological_processglutathione metabolism
GO:0009416biological_processresponse to light stimulus
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009507cellular_componentchloroplast
GO:0004148molecular_functiondihydrolipoyl dehydrogenase activity
GO:0004362molecular_functionglutathione-disulfide reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4154.1.S1_at--673--8451Chr02:34836335..34836359 (25 bp)
TGGCCAGCCAACTAAACCTGATTAC
LOC_Os02g56850
Os.4154.1.S1_at--675--751Chr02:34836364..34836385 (22 bp)
ATGTACCTTGTGCTGTTTTCTCCAT
LOC_Os02g56850
Os.4154.1.S1_at--929--6271Chr02:34837016..34837040 (25 bp)
GATGTTCTTGTTTACACTTCCAGCT
LOC_Os02g56850
Os.4154.1.S1_at--857--9991Chr02:34837488..34837512 (25 bp)
TAGCGCTGAAGTGTGGAGCCACCAA
LOC_Os02g56850
Os.4154.1.S1_at--820--2931Chr02:34837511..34837533 (23 bp)
AAGGCGACCTTTGACAGCACTGTTG
LOC_Os02g56850
Os.4154.1.S1_at--204--1511Chr02:34837526..34837628 (25 bp)
AGCACTGTTGGTATTCACCCGTCTG
LOC_Os02g56850
Os.4154.1.S1_at--258--1811Chr02:34837620..34837644 (25 bp)
ACCCGTCTGCTGCTGAAGAGTTTGT
LOC_Os02g56850
Os.4154.1.S1_at--182--7371Chr02:34837643..34837667 (25 bp)
GTGACAATGCGGACCTTGACCAGGC
LOC_Os02g56850
Os.4154.1.S1_at--575--7371Chr02:34837670..34837694 (25 bp)
GTGAGCCCATCATCCAAGCCAAAGA
LOC_Os02g56850
Os.4154.1.S1_at--499--2871Chr02:34837768..34837792 (25 bp)
AAGTGTACTCTGGTTTGCATCTGGT
LOC_Os02g56850
Os.4154.1.S1_at--43--4971Chr02:34837784..34837808 (25 bp)
GCATCTGGTAATTTCACGTTAGGGA
LOC_Os02g56850
Target Sequence 
TGGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTCCATCCCACCACTATCAGTAGTGGGCTTGA
GTGAACAGCAGGCTTTGGAGGAAGCCAAGAGCGATGTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATA
TCCAAACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAAAGTACTTGGTGCATCAATGTGTGG
ACCAGATGCACCAGAGATNATCCAGGGTATGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTG
TTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTGACCAGGCGCGTGAGCCCATCATCCAAGCCA
AAGACAAACTTGTAGGCAAGATGAGTAATTTTGGATAAAGAAACATATATACCCGTTTTGATTTATATTTTGTGGCAAAG
TGTACTCTGGTTTGCATCTGGTAATTTCACGTTAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis