Browse Element(s) Details


Os.4171.1.S1_s_at

Description gb:AB003322.1
DB_XREF= gi:5295977
TID=Os.4171.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4171 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for MADS box-like protein, complete cds, clone:C50086.
PROD=MADS box-like protein
FL= gb:AK070121.1 gb:AB003322.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5234011/11SHORT VEGETATIVE PHASE protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52280Os.25104.1.S1_x_at11/112+32002145..32011145expressed protein
LOC_Os02g52280Os.25104.2.S1_at10/112+32002145..32011145expressed protein
LOC_Os02g52290Os.12178.1.S1_at11/112+32011864..32013982Peptidylprolyl isomerase FKBP12, putative, expressed
LOC_Os02g52300Os.26718.1.S1_at11/112+32015703..32017260expressed protein
LOC_Os02g52314Os.51499.1.S1_at11/112+32017453..32021281ER6 protein, putative, expressed
LOC_Os02g52330OsAffx.3045.1.S1_at11/112+32023652..32027083hypothetical protein
LOC_Os02g52330Os.7307.3.S1_x_at3/112+32023652..32027083hypothetical protein
LOC_Os02g52340OsAffx.24832.1.S1_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52340Os.4171.1.S1_s_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52350OsAffx.12609.1.S1_at11/112+32040339..32041341hypothetical protein
LOC_Os02g52360Os.53007.1.S1_at11/112+32041897..32046431peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g52370Os.53665.1.S1_at11/112+32046713..32050017armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os02g52380OsAffx.24833.1.S1_at11/112+32053128..32054420hypothetical protein
LOC_Os02g52390OsAffx.24834.1.S1_x_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.15022.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390OsAffx.24834.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.39065.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.2.A1_s_at10/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.54818.1.S1_at1/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52400Os.7555.1.S1_at11/112+32063121..32064413expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009908biological_processflower development
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4171.1.S1_s_at--179--5471Chr02:32037715..32037739 (25 bp)
GAACATGCAACTCAGAAACCAGGTA
LOC_Os02g52340
Os.4171.1.S1_s_at--159--1031Chr02:32037825..32037849 (25 bp)
AGGTATCCCAGATATCACCAGCTGA
LOC_Os02g52340
Os.4171.1.S1_s_at--59--5311Chr02:32037884..32037908 (25 bp)
GAAGGACAGTCCTCTGAATCTGTGA
LOC_Os02g52340
Os.4171.1.S1_s_at--400--5731Chr02:32037910..32037934 (25 bp)
GACTGCATTGCATTCTGGAAGTTCA
LOC_Os02g52340
Os.4171.1.S1_s_at--597--8511Chr02:32037925..32037949 (25 bp)
TGGAAGTTCACAGTCGCAGGATAAT
LOC_Os02g52340
Os.4171.1.S1_s_at--303--711Chr02:32037951..32037975 (25 bp)
ATGATGGCTCGGATGTATCCCTGAA
LOC_Os02g52340
Os.4171.1.S1_s_at--1006--10811Chr02:32038725..32038749 (25 bp)
TTGTGTTATTCCCAAACCCAGACTG
LOC_Os02g52340
Os.4171.1.S1_s_at--295--1771Chr02:32038787..32038811 (25 bp)
ACCTGATTTATCATCCTTGTGGCTG
LOC_Os02g52340
Os.4171.1.S1_s_at--693--8751Chr02:32038831..32038855 (25 bp)
TGTACTGTTCGCTAGGATCTTGACT
LOC_Os02g52340
Os.4171.1.S1_s_at--996--771Chr02:32038870..32038894 (25 bp)
ATGTGCCGTTTAATTATCCCATCGC
LOC_Os02g52340
Os.4171.1.S1_s_at--48--4891Chr02:32038893..32038917 (25 bp)
GCTATTGGCACTCCTTATGCGATAC
LOC_Os02g52340
Target Sequence 
GAACATGCAACTCAGAAACCAGGTATCCCAGATATCACCAGCTGAGAAGCAAGTTGTTGATACTGAAAATTTTGTTACCG
AAGGACAGTCCTCTGAATCTGTGATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGAT
GTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTG
GAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACTGCAATAATATAATCTTGCGTTGGAAG
CGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGAC
TAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTATGCGATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4171.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis