Browse Element(s) Details


Os.42298.1.S1_x_at

Description gb:NM_190897.1
DB_XREF= gi:34908877
GEN=P0699H05.11
TID=Os.42298.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42298 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0699H05.11 (P0699H05.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0699H05.11 (P0699H05.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g583103/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58270OsAffx.23836.1.S1_at11/111+34001253..34006565Subtilisin N-terminal Region family protein
LOC_Os01g58280Os.35642.2.S1_x_at11/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.48715.1.A1_x_at4/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_x_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.5.S1_x_at11/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.4.A1_at10/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58300OsAffx.26617.1.S1_at10/111+34023403..34024850hypothetical protein
LOC_Os01g58300OsAffx.26617.4.S1_x_at4/111+34023403..34024850hypothetical protein
LOC_Os01g58310Os.28798.1.S1_at11/111+34025976..34026530expressed protein
LOC_Os01g58310Os.42298.1.S1_x_at3/111+34025976..34026530expressed protein
LOC_Os01g58320Os.10196.1.S1_at9/111+34030250..34030708expressed protein
LOC_Os01g58320Os.42299.1.S1_x_at3/111+34030250..34030708expressed protein
LOC_Os01g58330OsAffx.23837.1.S1_at10/111+34031809..34032977hypothetical protein
LOC_Os01g58330Os.6.2.S1_at2/111+34031809..34032977hypothetical protein
LOC_Os01g58340NANA1+34037035..34038059hypothetical protein
LOC_Os01g58350OsAffx.23838.2.S1_at11/111+34040491..34042290hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42298.1.S1_x_at--370--4371Chr01:34034426..34034450 (25 bp)
CCAACTCCGGGCTGCCGTGCGGAGT
NONE
Os.42298.1.S1_x_at--56--3951Chr01:34034445..34034469 (25 bp)
CGGAGTTCGTCGACCCGATTTGCAC
NONE
Os.42298.1.S1_x_at--24--10251Chr01:34034463..34034487 (25 bp)
TTTGCACCGCCGAGATCCATCTTCG
NONE
Os.42298.1.S1_x_at--428--4432Chr01:34034503..34034527 (25 bp)
GCCATGCCAAATCCGGCGGTGCCGT
NONE
Os.42298.1.S1_x_at--974--9271Chr01:34034514..34034538 (25 bp)
TCCGGCGGTGCCGTGGAGCTTCTCA
NONE
Os.42298.1.S1_x_at--454--3331Chr01:34034545..34034569 (25 bp)
CACTCGTCCTAACGCCTGGGAGGAG
NONE
Os.42298.1.S1_x_at--434--5912Chr01:34034579..34034620 (25 bp)
GAGCTCGTCGCTCGATTCCTCGTCG
NONE
Os.42298.1.S1_x_at--137--4611NONE
GCGACGCCATAACCACAAGACAGAA
NONE
Os.42298.1.S1_x_at--201--7812Chr01:34035651..34035675 (25 bp)
GGTCGTCGTCGTTGCTGCCCGTCTG
NONE
Os.42298.1.S1_x_at--1047--7252Chr01:34035683..34035707 (25 bp)
GTCCTCGCCATGCTCTGCGTGGCGA
NONE
Os.42298.1.S1_x_at--1162--5872Chr01:34035781..34035805 (25 bp)
GAGCGCCACGAGAACCAGCGGCAGC
NONE
Target Sequence 
CCAACTCCGGGCTGCCGTGCGGAGTTCGTCGACCCGATTTGCACCGCCGAGATCCATCTTCGCTCCTGCTGCCCCACGCC
ATGCCAAATCCGGCGGTGCCGTGGAGCTTCTCATCCATCCACTCGTCCTAACGCCTGGGAGGAGAGAGGCGTCGAGCTCG
TCGCTCGATTCCTCGTCGCCTCCACGCCTGTTGCCAAGCTTGCCGTCCCGTCCGGCGACAGAAAAGGGACGGTGACGAAA
AGGAGGGGACGACCGGAGGAAGATAGAGGTTGGTCGGAGGAGGAAGAGAGGCGCGGTGGCCGGTGGAGGGGCGACGCCAT
AACCACAAGACAGAAGATGAGGCGGTCGTCGTCGTTGCTGCCCGTCTGCACGCTCGTCCTCGCCATGCTCTGCGTGGCGA
GCCTCATGGGCGTCACGGAAGGGCGGCGAGGCGGAGGCCGCACCAACATCGGCGGCGGCGGCGGGGCCAGAGGGAGCGCC
ACGAGAACCAGCGGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42298.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis