Browse Element(s) Details


Os.42369.1.S1_s_at

Description gb:NM_190730.1
DB_XREF= gi:34908543
GEN=P0423B08.22
TID=Os.42369.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42369 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0423B08.22 (P0423B08.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0423B08.22 (P0423B08.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6444011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64400OsAffx.23913.3.S1_at11/111+37706728..37706958hypothetical protein
LOC_Os01g64400OsAffx.23913.3.S1_s_at11/111+37706728..37706958hypothetical protein
LOC_Os01g64410OsAffx.23914.1.S1_at11/111+37708329..37709063uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os01g64420Os.35344.18.S1_x_at10/111+37711711..37716857hypothetical protein
LOC_Os01g64420Os.35344.3.S1_x_at8/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_at7/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_x_at4/111+37711711..37716857hypothetical protein
LOC_Os01g64430Os.7351.1.S1_at11/111+37723064..37724401uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g64440Os.42369.1.S1_s_at11/111+37730057..37730731expressed protein
LOC_Os01g64440OsAffx.2403.1.S1_at11/111+37730057..37730731expressed protein
LOC_Os01g64450Os.36345.1.S1_at10/111+37733111..37734090Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64460OsAffx.23915.1.S1_at10/111+37737511..37738223hypothetical protein
LOC_Os01g64470Os.12119.1.S1_at10/111+37738860..37739860Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64480OsAffx.21715.1.S1_at11/111+37742664..37743329Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64490Os.5832.1.S1_at11/111+37743879..37750198Protein kinase domain containing protein, expressed
LOC_Os01g64500OsAffx.11728.1.S1_at10/111+37752125..37753813hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42369.1.S1_s_at--573--7131Chr01:37730143..37730167 (25 bp)
GTCATCGTCGCGCTGTTGTCTCTAC
LOC_Os01g64440
Os.42369.1.S1_s_at--1043--10811Chr01:37730158..37730182 (25 bp)
TTGTCTCTACTCGTGGCCGTTCTTG
LOC_Os01g64440
Os.42369.1.S1_s_at--870--4691Chr01:37730225..37730249 (25 bp)
GCGGCTTCGTCCTGTTCGGCATATG
LOC_Os01g64440
Os.42369.1.S1_s_at--845--7251Chr01:37730233..37730257 (25 bp)
GTCCTGTTCGGCATATGCTTCAATG
LOC_Os01g64440
Os.42369.1.S1_s_at--427--10131Chr01:37730246..37730270 (25 bp)
TATGCTTCAATGACAAGGAGAGCCA
LOC_Os01g64440
Os.42369.1.S1_s_at--474--3411Chr01:37730269..37730293 (25 bp)
CAGCAGCTGCGCATGGCCAGGCCGT
LOC_Os01g64440
Os.42369.1.S1_s_at--55--4431Chr01:37730284..37730308 (25 bp)
GCCAGGCCGTCCTTGGAGAGGAACC
LOC_Os01g64440
Os.42369.1.S1_s_at--823--6291Chr01:37730350..37730374 (25 bp)
GATGATGACCAGGAGCCGGACCAGT
LOC_Os01g64440
Os.42369.1.S1_s_at--1161--3471Chr01:37730415..37730439 (25 bp)
CAGGAGCCTGTCCACGATAGACGAG
LOC_Os01g64440
Os.42369.1.S1_s_at--629--9331Chr01:37730497..37730521 (25 bp)
TCGCCGGACCGAAGAGACGCCCGGT
LOC_Os01g64440
Os.42369.1.S1_s_at--136--1391Chr01:37730511..37730535 (25 bp)
AGACGCCCGGTCACTCCAGACGATG
LOC_Os01g64440
Target Sequence 
GTCATCGTCGCGCTGTTGTCTCTACTCGTGGCCGTTCTTGTCCGGCGGTGGTGGCGACGCCGCGAGTCCGTCGCGTCCAG
CCGCGGCTTCGTCCTGTTCGGCATATGCTTCAATGACAAGGAGAGCCAGCAGCTGCGCATGGCCAGGCCGTCCTTGGAGA
GGAACCGGCGGTGGCCGTCGCGGGAGCGCCAACCCGGCGAGGCAGAGGATGATGACCAGGAGCCGGACCAGTGCGAGCTC
GAGAGGTGGAAGAAGATGTTCGGGGGCCCGGCCAGGAGCCTGTCCACGATAGACGAGGGGACGGAGAAGGGGACGACGCC
GATCACCACGCCGGCGTTCTGCTCACCGGCGGCGTCGCCGGACCGAAGAGACGCCCGGTCACTCCAGACGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42369.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis