Browse Element(s) Details


Os.42436.1.S1_at

Description gb:CB096636
DB_XREF= gi:27920828
DB_XREF=AF53-Rpf_06_D13_T7_057.ab1
CLONE=C0002005
TID=Os.42436.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42436 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative aldose reductase (P0005H10.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6286011/11oxidoreductase, aldo/keto reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62810Os.28217.1.S1_at11/111+36706484..36712238Regulator of chromosome condensation, putative, expressed
LOC_Os01g62820Os.9242.1.A1_at11/111+36712474..36717260Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g62820Os.9242.2.S1_x_at11/111+36712474..36717260Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g62830Os.23635.1.S1_at11/111+36719001..36719713expressed protein
LOC_Os01g62840Os.14234.1.S1_at11/111+36722335..36725034mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os01g62850Os.19137.1.S1_at11/111+36725833..36728556integral membrane protein, putative, expressed
LOC_Os01g62860Os.42436.1.S1_at11/111+36730314..36734228oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62870Os.5560.1.S1_at11/111+36737563..36741458oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62880Os.7392.2.S1_x_at11/111+36744963..36746878oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62890Os.49468.2.S1_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890OsAffx.21738.1.S1_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890Os.49468.2.S1_x_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890OsAffx.21738.1.S1_x_at10/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62900Os.33244.1.S2_at11/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62900Os.33244.1.S1_at11/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62900Os.10728.1.S1_at1/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42436.1.S1_at--702--7891Chr01:36732607..36732631 (25 bp)
GGTTCACCTGGTTCAACATGGATGA
LOC_Os01g62860
Os.42436.1.S1_at--1127--6291Chr01:36732627..36732651 (25 bp)
GATGAACAGTAACGTCCTTAAGGAA
LOC_Os01g62860
Os.42436.1.S1_at--102--5271Chr01:36732649..36732673 (25 bp)
GAATCCGTCATCATCTCAATTGCAG
LOC_Os01g62860
Os.42436.1.S1_at--1152--7551Chr01:36733919..36733943 (25 bp)
GGGCGACGTCATTGTTAATCCCCAC
LOC_Os01g62860
Os.42436.1.S1_at--67--6771Chr01:36733932..36733956 (25 bp)
GTTAATCCCCACAGCGTTTATAAGA
LOC_Os01g62860
Os.42436.1.S1_at--227--1171Chr01:36733993..36734017 (25 bp)
AGTCAGCTTACGTTAGTGCCAGTCA
LOC_Os01g62860
Os.42436.1.S1_at--139--10771Chr01:36734071..36734095 (25 bp)
TTGAGTCTCTTGAGCTCCTATTCAA
LOC_Os01g62860
Os.42436.1.S1_at--1090--4951Chr01:36734120..36734144 (25 bp)
GCATCATGTTCCCTTAGAATTCGTA
LOC_Os01g62860
Os.42436.1.S1_at--1058--1471Chr01:36734135..36734159 (25 bp)
AGAATTCGTATTAGCGCTCCTCTGA
LOC_Os01g62860
Os.42436.1.S1_at--571--10451Chr01:36734145..36734169 (25 bp)
TTAGCGCTCCTCTGAATAATACTGG
LOC_Os01g62860
Os.42436.1.S1_at--97--771Chr01:36734173..36734197 (25 bp)
ATGTCATTTGTATGCTTCGCCTCTG
LOC_Os01g62860
Target Sequence 
GGTTCACCTGGTTCAACATGGATGAACAGTAACGTCCTTAAGGAATCCGTCATCATCTCAATTGCAGAGAAGCTCGGCAA
AACTCCTGCNCAAGTGGCACTGCACTGGAACATTCAGATGGGTCACAGTGTACTCCCAAAAAGTGTGACCGAAGAAAGGA
TAAAGCAGAACATAGATGTTTATGACTGGTCTATTCCAGAGGACTTGCTTGTTAAGTTCTCNGAGATTAAGCAGGTTAGG
CTTCTCAGGGGCGACGTCATTGTTAATCCCCACAGCGTTTATAAGACCCATGAGGAGCTCTGGGACGGCGAAATTTAGAT
GCAGTCAGCTTACGTTAGTGCCAGTCACTCTCACTGAACATTATTTTTTCACGAATTTACGCTTATCTAATGTATGGTGT
TTGAGTCTCTTGAGCTCCTATTCAATGTAATGAACCTGCTTGATCAGCAGCATCATGTTCCCTTAGAATTCGTATTAGCG
CTCCTCTGAATAATACTGGATCATGTCATTTGTATGCTTCGCCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis