Browse Element(s) Details


Os.42729.1.S1_at

Description gb:BM037719
DB_XREF= gi:16753340
DB_XREF=S096G03
CLONE=S096G03
TID=Os.42729.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0052O12.29 (OSJNBa0052O12.29), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g705503/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70500Os.31293.1.S1_at10/111+41160454..41161710expressed protein
LOC_Os01g70509NANA1+41163696..41164196NA
LOC_Os01g70520Os.26537.1.S1_a_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.26537.2.S1_x_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.26537.1.S1_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.51558.1.S1_x_at1/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70540OsAffx.8479.1.S1_at7/111+41178852..41184665retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g70550Os.15260.1.S1_s_at11/111+41185276..41188676expressed protein
LOC_Os01g70550Os.42729.1.S1_at3/111+41185276..41188676expressed protein
LOC_Os01g70560Os.47972.1.S1_at11/111+41189635..41191216expressed protein
LOC_Os01g70570Os.35284.1.S1_s_at11/111+41191764..41195193phospholipid/glycerol acyltransferase family protein, putative, expressed
LOC_Os01g70580Os.52120.1.S1_x_at11/111+41195558..41198733Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g70590OsAffx.2448.1.S1_at10/111+41202224..41203138eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os01g70600OsAffx.23990.1.S1_at11/111+41203986..41208030eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os01g70600OsAffx.23990.2.S1_x_at2/111+41203986..41208030eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os01g70610OsAffx.23990.2.S1_at11/111+41208631..41208948hypothetical protein
LOC_Os01g70610OsAffx.23990.2.S1_x_at11/111+41208631..41208948hypothetical protein
LOC_Os01g70620OsAffx.23991.1.S1_at11/111+41210028..41210252hypothetical protein
LOC_Os01g70630OsAffx.30397.1.S1_x_at9/111+41211415..41218072hypothetical protein
LOC_Os01g70630OsAffx.30397.3.S1_x_at8/111+41211415..41218072hypothetical protein
LOC_Os01g70630OsAffx.30397.2.S1_at5/111+41211415..41218072hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42729.1.S1_at--381--2471Chr01:41185773..41185850 (25 bp)
AACACACTGATAAAGCTCATCCTGC
LOC_Os01g70550
Os.42729.1.S1_at--689--3291Chr01:41185771..41185848 (25 bp)
CACACTGATAAAGCTCATCCTGCTG
LOC_Os01g70550
Os.42729.1.S1_at--1048--711Chr01:41185725..41185749 (25 bp)
ATGATATTGCAGGTTTACTGGGTGA
LOC_Os01g70550
Os.42729.1.S1_at--1122--9431NONE
TCGGATTGATGTCATGTGTCAACCA
NONE
Os.42729.1.S1_at--833--6271NONE
GATGTCATGTGTCAACCAAACTATT
NONE
Os.42729.1.S1_at--1017--7111NONE
GTCATGTGTCAACCAAACTATTTTT
NONE
Os.42729.1.S1_at--670--5811NONE
GACCCAAAAGAAGTGGTTGCATTTA
NONE
Os.42729.1.S1_at--557--4371Chr02:9109680..9109746 (24 bp)
CCAAACTGTTGATAAATACATGAAG
NONE
Os.42729.1.S1_at--924--331NONE
ATACATGAAGAAATCCTGACCCAAA
NONE
Os.42729.1.S1_at--379--5371NONE
GAAGAAATCCTGACCCAAATTTTGA
NONE
Os.42729.1.S1_at--925--551NONE
ATCCTGACCCAAATTTTGATAACAT
NONE
Target Sequence 
AACACACTGATAAAGCTCATCCTGCTGCTGCTGCTGCTGATGATGATGATGATATTGCAGGTTTACTGGGTGAGGAAGCA
TGTGTTCGTGAAGGTGTGGCATTCCACCCGTGTGGGCATCCTCCTNTACGTCCTCTTCGCGCAGATCTTGTTCTGGGCCC
TTGTCGCCGGCCTCCTCCACCGTGCTCGCCTCTACTGGAAGCTCTAGCACTGCACTGGTACACTACACTACACTGACAGC
GTTTACACAGGGGCTGTTCGGATTGATGTCATGTGTCAACCAAACTATTTTTTTTAAAATTGACCCAAAAGAAGTGGTTG
CATTTAGTTTGTTGCCAAACTGTTGATAAATACATGAAGAAATCCTGACCCAAATTTTGATAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis