Browse Element(s) Details


Os.42877.1.S1_at

Description gb:AK119868.1
DB_XREF= gi:37989491
TID=Os.42877.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.42877 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0710E05.11 (P0710E05.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-179-B12, full insert sequence.
FL= gb:AK119868.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0947011/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09430Os.1465.1.S1_at9/111+4797049..4798979SyrP, putative, expressed
LOC_Os01g09440OsAffx.24130.1.S1_x_at6/111+4804787..4805302hypothetical protein
LOC_Os01g09450Os.19952.1.S1_at11/111+4813647..4815762AUX/IAA family protein, expressed
LOC_Os01g09450OsAffx.26801.1.S1_x_at1/111+4813647..4815762AUX/IAA family protein, expressed
LOC_Os01g09460Os.33758.2.S1_s_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09460Os.33758.2.S1_x_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09460Os.33758.1.S1_s_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09470Os.42877.1.S1_at11/111+4823392..4825535IQ calmodulin-binding motif family protein, expressed
LOC_Os01g09470OsAffx.26803.1.S1_x_at2/111+4823392..4825535IQ calmodulin-binding motif family protein, expressed
LOC_Os01g09480OsAffx.23170.1.S1_at11/111+4833806..4835017hypothetical protein
LOC_Os01g09490Os.35344.3.S1_x_at11/111+4837156..4842141transposon protein, putative, Mutator sub-class
LOC_Os01g09490Os.35344.18.S1_x_at9/111+4837156..4842141transposon protein, putative, Mutator sub-class
LOC_Os01g09490OsAffx.22940.5.S1_x_at3/111+4837156..4842141transposon protein, putative, Mutator sub-class
LOC_Os01g09500NANA1+4846703..4848995expressed protein
LOC_Os01g09510Os.37611.1.S1_at11/111+4849232..485124660S acidic ribosomal protein P2A, putative, expressed
LOC_Os01g09510Os.37611.2.S1_x_at7/111+4849232..485124660S acidic ribosomal protein P2A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42877.1.S1_at--757--10511Chr01:4825118..4825142 (25 bp)
TTCAACTTCAAGACCGCCGTGCTCA
LOC_Os01g09470
Os.42877.1.S1_at--1060--1791Chr01:4825182..4825206 (25 bp)
ACCGCGACCTCTTCTTGCAGAGGAG
LOC_Os01g09470
Os.42877.1.S1_at--821--7751Chr01:4825209..4825233 (25 bp)
GGTGATCTGAACAGCGTTCGCCATT
LOC_Os01g09470
Os.42877.1.S1_at--692--3371Chr01:4825220..4825244 (25 bp)
CAGCGTTCGCCATTGCAAGAAGGAA
LOC_Os01g09470
Os.42877.1.S1_at--839--3651Chr01:4825274..4825298 (25 bp)
CTTCTTAGTCTCTGTTTCTATGCGA
LOC_Os01g09470
Os.42877.1.S1_at--543--9151Chr01:4825294..4825318 (25 bp)
TGCGACATAGTAGCGATCGATCATG
LOC_Os01g09470
Os.42877.1.S1_at--1127--9391Chr01:4825361..4825385 (25 bp)
TCGTCTCCGAGCTTGTTACTGACAA
LOC_Os01g09470
Os.42877.1.S1_at--739--3291Chr01:4825394..4825418 (25 bp)
CAAAGTGTACGTTGAGCTAGCTGGA
LOC_Os01g09470
Os.42877.1.S1_at--1143--1211Chr01:4825446..4825470 (25 bp)
ACTTCTTTCCCCTCTGATTTAACAG
LOC_Os01g09470
Os.42877.1.S1_at--981--7331Chr01:4825470..4825494 (25 bp)
GTGCACTTGGATGTACATTCCCCTA
LOC_Os01g09470
Os.42877.1.S1_at--790--7011Chr01:4825482..4825506 (25 bp)
GTACATTCCCCTATCAATTCAAGGC
LOC_Os01g09470
Target Sequence 
TTCAACTTCAAGACCGCCGTGCTCAGCCGCTTCGACCGCTCGTCGGAGCCGGCCGCCGAGAGGGACCGCGACCTCTTCTT
GCAGAGGAGGNGGTGATCTGAACAGCGTTCGCCATTGCAAGAAGGAAGAGGACTACAAGAACTAGTTCTTCTTCTTCTTC
TTAGTCTCTGTTTCTATGCGACATAGTAGCGATCGATCATGTTTGATCGATGGCAATGGCGATCGTGTGCTCCGCCATTG
CCGTCGTCTCCGAGCTTGTTACTGACAAGTGACAGGCAAAGTGTACGTTGAGCTAGCTGGAGGGGAGATTACAAAAAAAA
AAAAATCCCACTTCTTTCCCCTCTGATTTAACAGTGCACTTGGATGTACATTCCCCTATCAATTCAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis