Browse Element(s) Details


Os.42940.1.S1_x_at

Description gb:NM_189507.1
DB_XREF= gi:34906097
GEN=P0020E09.9
TID=Os.42940.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42940 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor-like protein kinase (P0020E09.9), mRNA.
PROD=putative receptor-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7455011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74510Os.33444.1.A1_at11/111+43479351..43484933expressed protein
LOC_Os01g74510Os.33444.2.S1_at1/111+43479351..43484933expressed protein
LOC_Os01g74520Os.14216.3.S1_x_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74520Os.53500.1.S1_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74530Os.14216.1.S1_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74530Os.14216.1.S1_a_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74540Os.42941.1.S1_s_at11/111+43498943..43499888GATA zinc finger family protein, expressed
LOC_Os01g74550Os.42940.1.S1_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74550Os.42940.1.S1_x_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74560OsAffx.9725.1.S1_at7/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74560OsAffx.27865.1.S1_x_at3/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74570OsAffx.9724.1.S1_at11/111+43512468..43513164Tetraspanin family protein
LOC_Os01g74580Os.38811.1.S1_a_at11/111+43516019..43520381DnaJ domain containing protein, expressed
LOC_Os01g74590Os.16203.1.S1_at11/111+43520874..43521717Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g74600Os.33222.1.S1_at11/111+43522968..43525515Vegetative storage protein, putative, expressed
LOC_Os01g74610Os.19202.1.S1_a_at11/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74610Os.53769.1.S1_x_at9/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42940.1.S1_x_at--603--2891Chr01:43502870..43502894 (25 bp)
AAGGTGTCCGACCTGGGACTCTCCA
LOC_Os01g74550
Os.42940.1.S1_x_at--1067--5791Chr01:43502861..43502885 (25 bp)
GACCTGGGACTCTCCAAGTCCAACA
LOC_Os01g74550
Os.42940.1.S1_x_at--913--1631Chr01:43502735..43502759 (25 bp)
AGCGACCTCTACAGCTTCGGCATCA
LOC_Os01g74550
Os.42940.1.S1_x_at--409--4271Chr01:43502635..43502659 (25 bp)
CCTGGGCCAAGTCGCACTACGAGAG
LOC_Os01g74550
Os.42940.1.S1_x_at--344--4111Chr01:43502623..43502647 (25 bp)
CGCACTACGAGAGCGGCGACATCGA
LOC_Os01g74550
Os.42940.1.S1_x_at--192--5671Chr01:43502606..43502630 (25 bp)
GACATCGAGGCCATCGTGGACCCGT
LOC_Os01g74550
Os.42940.1.S1_x_at--793--1791Chr01:43502566..43502590 (25 bp)
ACCGCGACGTGCACTCGGTGTGGAA
LOC_Os01g74550
Os.42940.1.S1_x_at--850--951Chr01:43502470..43502494 (25 bp)
AGGACATCCAGGAGGCCATCGCGCT
LOC_Os01g74550
Os.42940.1.S1_x_at--38--7811Chr01:43502353..43502377 (25 bp)
GGTCGCACGACCTCGTCATGGACAA
LOC_Os01g74550
Os.42940.1.S1_x_at--491--2211Chr01:43502332..43502356 (25 bp)
ACAACCTCATGTACGACTCCAGCTT
LOC_Os01g74550
Os.42940.1.S1_x_at--417--3511Chr01:43502325..43502349 (25 bp)
CATGTACGACTCCAGCTTCTGCGAT
LOC_Os01g74550
Target Sequence 
AAGGTGTCCGACCTGGGACTCTCCAAGTCCAACAAGGCCACCAACTCCACCACCAATACCATCACCACCCACGTGCGCGG
CACCCTCGGCTACCTGGACCCGCACTACTACGTCTCCCAGCAGCTCACCCACAAGAGCGACCTCTACAGCTTCGGCATCA
TCCTGCTCGAGCTCATCTCCGGCCGCCCGCCCATCCTGCTCACGCCCGGCGCCGGTGCCATGGCCAGCCTCGGGCCCTGG
GCCAAGTCGCACTACGAGAGCGGCGACATCGAGGCCATCGTGGACCCGTCGCTGCGCGGCCGCTACCGCGACGTGCACTC
GGTGTGGAAGGTGGCCGAGACGGCGGTGCGGTGCATCGACGCCGATCCCCGGGGGCGCCCGTCCATGCCCGAGGTGGTCA
AGGACATCCAGGAGGCCATCGCGCTGGAGATGCCGTCCTCGGAGTCGGAGAGGCCCGCCGCCAGCTTCTTCTCTCCGGGG
GCGGGGGCAGCCGGTGCGCGCTCCTCGGCGACGGTGCGGTCGCACGACCTCGTCATGGACAACCTCATGTACGACTCCAG
CTTCTGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42940.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis