Browse Element(s) Details


Os.4327.1.S1_at

Description gb:AF384030.1
DB_XREF= gi:15290604
TID=Os.4327.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4327 (NCBI UniGene Cluster)
DEF=Oryza sativa seven transmembrane protein MLO2 mRNA, complete cds.
PROD=seven transmembrane protein MLO2
FL= gb:AK098993.1 gb:AF384030.1 gb:AK111990.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0370011/11MLO protein homolog 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03660Os.2691.1.S1_a_at11/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03660Os.54519.1.S1_at1/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03670Os.4324.1.S1_at11/113+1608507..1610088expressed protein
LOC_Os03g03680OsAffx.30403.1.S1_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03680OsAffx.30403.1.S1_s_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03690Os.53684.1.A1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690OsAffx.12724.1.S1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690Os.10405.1.S1_at1/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03700Os.4327.1.S1_at11/113+1623489..1627107MLO protein homolog 1, putative, expressed
LOC_Os03g03710Os.24766.1.A1_s_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710Os.24766.1.A1_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710OsAffx.3125.1.S1_at10/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03720Os.4329.1.S1_at11/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03720Os.10732.1.S1_s_at1/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03730OsAffx.24955.1.S1_s_at11/113+1645808..1647611regulatory protein, putative, expressed
LOC_Os03g03740NANA3+1648147..1648488retrotransposon protein, putative, unclassified
LOC_Os03g03750OsAffx.12725.1.S1_at8/113+1649370..1649778hypothetical protein
LOC_Os03g03760OsAffx.12726.1.S1_at11/113+1651176..1656154myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008219biological_processcell death
GO:0005886cellular_componentplasma membrane
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4327.1.S1_at--34--6491Chr03:1624408..1624432 (25 bp)
GATACTGTTCCAGAACGCATTTCAG
LOC_Os03g03700
Os.4327.1.S1_at--20--2091Chr03:1624383..1624402 (20 bp)
ACATTTCGTGTGGACTCTGGCAACC
LOC_Os03g03700
Os.4327.1.S1_at--626--9451Chr03:1624261..1624282 (22 bp)
TCTGGCAACCCCTGGCCTGAAGAAA
LOC_Os03g03700
Os.4327.1.S1_at--269--7671Chr03:1624191..1624215 (25 bp)
GGGATATTCATTCAGTTCCTATGCA
LOC_Os03g03700
Os.4327.1.S1_at--383--10531Chr03:1624181..1624205 (25 bp)
TTCAGTTCCTATGCAGCTACAGCAC
LOC_Os03g03700
Os.4327.1.S1_at--874--4511Chr03:1623945..1623969 (25 bp)
GCCGACGAGTTCCTAGCACAGATGA
LOC_Os03g03700
Os.4327.1.S1_at--754--3712Chr10:7036754..7036778 (25 bp)
CTAGCACAGATGAGCGGCGACACGA
NONE
Os.4327.1.S1_at--1101--871Chr03:1623809..1623833 (25 bp)
AGGCCAGGGACATGTACCCGGTGCC
LOC_Os03g03700
Os.4327.1.S1_at--716--4512Chr10:7036936..7036960 (25 bp)
GCCGCATGGGTTTAACCGGATGGAC
NONE
Os.4327.1.S1_at--413--9411Chr03:1623717..1623741 (25 bp)
TCGTCGGCCATCCAAGTTGACATCG
LOC_Os03g03700
Os.4327.1.S1_at--1019--9491Chr03:1623680..1623704 (25 bp)
TCTCCTTCAGTGTACAACGGTGATG
LOC_Os03g03700
Target Sequence 
GATACTGTTCCAGAACGCATTTCAGATGGCACATTTCGTGTGGACTCTGGCAACCCCTGGCCTGAAGAAATGCTTCCATG
AAAACATGGGCTTGAGTATCATGAAAGTTGTAGTGGGGATATTCATTCAGTTCCTATGCAGCTACAGCACCTTCCCTCTN
TACGCACTCGTCACACAGATGGGATCAAACATGAAGAAGACCATCTTCGAGGAGCAGACGATGAAGGCCCTGATGAACTG
GAGGAAGACGGCGAGGGAGAAGAAGAAGCTCCGGGACGCCGACGAGTTCCTAGCACAGATGAGCGGCGACACGACGCCGA
GCCGCGGCTCGTCGCCGGTGCACCTGCTGCACAAGCAAAGGGTGAGGTCGGAAGATCCGCCGAGCGCACCGGCATCGCCG
GGGTTCGCCGGAGAGGCCAGGGACATGTACCCGGTGCCCGTGGCGCCGGTGGTGCGGCCGCATGGGTTTAACCGGATGGA
CCCGGATAAGAGGAGGGCGGCGTCCTCGTCGGCCATCCAAGTTGACATCGCCGATTCTGATTTCTCCTTCAGTGTACAAC
GGTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis