Browse Element(s) Details


Os.43450.1.S1_at

Description gb:NM_188509.1
DB_XREF= gi:34904101
TID=Os.43450.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43450 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1223011/11Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12180Os.33971.1.S1_at11/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.1.S1_at9/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.2.S1_x_at4/111+6639467..6643094expressed protein
LOC_Os01g12190Os.47598.1.S1_at11/111+6646595..6647321expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_x_at9/111+6649926..6652092expressed protein
LOC_Os01g12200Os.3507.1.S1_at8/111+6649926..6652092expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_at4/111+6649926..6652092expressed protein
LOC_Os01g12210Os.26807.1.S1_at10/111+6655951..6659315Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g12220OsAffx.1987.1.S1_at11/111+6660335..6662262Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os01g12230Os.43450.1.S1_at11/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
LOC_Os01g12230OsAffx.26711.2.S1_at1/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
LOC_Os01g12240OsAffx.1988.1.S1_at8/111+6686511..6690668hypothetical protein
LOC_Os01g12240Os.23045.1.S1_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12240OsAffx.19438.2.S1_x_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12250Os.36177.1.S1_at10/111+6690832..6693597expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43450.1.S1_at--964--9451Chr01:6666064..6666167 (25 bp)
TCGGCCACACCTACGTGGTGAAGGC
LOC_Os01g12230
Os.43450.1.S1_at--870--8291Chr01:6665969..6665993 (25 bp)
GGCTTCAACAGCAACGGAGTGGTAC
LOC_Os01g12230
Os.43450.1.S1_at--545--871Chr01:6665595..6665617 (23 bp)
AGGCTACAACCTGATGGACGTCCGG
LOC_Os01g12230
Os.43450.1.S1_at--967--9271Chr01:6665575..6665599 (25 bp)
TCCGGCGCCGGAGGATCGTCAACGT
LOC_Os01g12230
Os.43450.1.S1_at--300--2111Chr01:6665485..6665509 (25 bp)
ACATGTACCGCCATCTCCAGGTCAA
LOC_Os01g12230
Os.43450.1.S1_at--949--3471Chr01:6665020..6665492 (25 bp)
CAGGTCAACCAGGTGCAGGACGAGA
LOC_Os01g12230
Os.43450.1.S1_at--457--1951Chr01:6664918..6664942 (25 bp)
ACGGCCGATGACAAGTACCCGATCT
LOC_Os01g12230
Os.43450.1.S1_at--716--6971Chr01:6664907..6664928 (22 bp)
GTACCCGATCTACATGACAGGTCCA
LOC_Os01g12230
Os.43450.1.S1_at--724--7791Chr01:6664748..6664772 (25 bp)
GGTCCAACACTGTACACTCTGTGCA
LOC_Os01g12230
Os.43450.1.S1_at--366--7331Chr01:6664728..6664752 (25 bp)
GTGCACCGTCTTGGTTGATCTCGAC
LOC_Os01g12230
Os.43450.1.S1_at--648--1871Chr01:6664705..6664729 (25 bp)
ACGAGGCGACGATGACCATCTACAA
LOC_Os01g12230
Target Sequence 
TCGGCCACACCTACGTGGTGAAGGCCACCTCGCCGGACGGCTCGTCGTCGTTCACCGCCTACACCTACGCCGGCGAGCTC
CCCACCTGCGCCTTCGGCTTCAACAGCAACGGAGTGGTACGTAGGCGATCGACGGCCGGCAGCGCCAACACCACTCTGAA
CTCGATCCCATTTCCGGCGTCAGGCTACAACCTGATGGACGTCCGGCGCCGGAGGATCGTCAACGTCGAGACCGCCTCCG
GCAACCGCTTCTCCGTGCGCGAGGCCGCCGCCGCGCCCTTCTTCCACGCCAACATGTACCGCCATCTCCAGGTCAACCAG
GTGCAGGACGAGAACTCCATGAGCAGGGAGAGGAGAGCGGCGGAGCTCTCGCCGGACACCAAGGAGAAGGCGCTGTCGCT
GCTCGGGGACACGGCCGATGACAAGTACCCGATCTACATGACAGGTCCAACACTGTACACTCTGTGCACCGTCTTGGTTG
ATCTCGACGAGGCGACGATGACCATCTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis