Browse Element(s) Details


Os.43567.1.S1_x_at

Description gb:NM_188308.1
DB_XREF= gi:34903699
GEN=P0489A05.16
TID=Os.43567.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489A05.16 (P0489A05.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0489A05.16 (P0489A05.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g439808/11transposon protein, putative, unclassified, expressed
LOC_Os07g099308/11transposon protein, putative, unclassified
LOC_Os01g461698/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g015507/11transposon protein, putative, unclassified
LOC_Os08g063007/11transposon protein, putative, unclassified
LOC_Os07g033506/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g035706/11transposon protein, putative, unclassified
LOC_Os08g371906/11transposon protein, putative, unclassified
LOC_Os07g034406/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g506105/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g373105/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g035504/11transposon protein, putative, unclassified
LOC_Os11g024904/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g472104/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g049004/11transposon protein, putative, unclassified
LOC_Os06g019344/11bell-like homeodomain protein 3, putative, expressed
LOC_Os03g030344/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g105704/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g476104/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g339204/11transposon protein, putative, unclassified
LOC_Os01g592803/11transposon protein, putative, unclassified
LOC_Os03g079303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g605243/11transposon protein, putative, unclassified
LOC_Os03g118743/11expressed protein
LOC_Os03g153103/11transposon protein, putative, unclassified
LOC_Os02g369003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g354203/11transposon protein, putative, unclassified
LOC_Os06g510293/11Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os05g360803/11transposon protein, putative, unclassified
LOC_Os01g387303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g466903/11hAT family dimerisation domain containing protein
LOC_Os01g067803/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g335103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g434002/11transposon protein, putative, unclassified, expressed
LOC_Os12g437602/11transposon protein, putative, unclassified
LOC_Os02g564102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g493702/11transposon protein, putative, unclassified
LOC_Os01g063602/11transposon protein, putative, unclassified
LOC_Os02g525702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g556901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g290401/11hypothetical protein
LOC_Os04g545201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g248901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g418501/11transposon protein, putative, unclassified
LOC_Os09g295841/11wall-associated kinase 3, putative, expressed
LOC_Os04g379901/11Sugar transporter family protein, expressed
LOC_Os02g449601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43930Os.33683.1.S1_at10/1112+27230138..27232311Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g43940Os.53453.1.S1_at10/1112+27232877..27237839TPR Domain containing protein, expressed
LOC_Os12g43950Os.6492.1.S1_at11/1112+27237930..27243182Associated with HOX family protein, expressed
LOC_Os12g43950Os.4650.1.S1_at1/1112+27237930..27243182Associated with HOX family protein, expressed
LOC_Os12g43960OsAffx.7884.1.S1_at11/1112+27251828..27252368hypothetical protein
LOC_Os12g43970Os.54768.1.S1_at10/1112+27252953..27255061hydrolase, alpha/beta fold family protein, expressed
LOC_Os12g43980Os.43567.1.S1_x_at8/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43980Os.38172.1.S1_x_at4/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43990Os.57165.1.S1_at11/1112+27260197..27261033expressed protein
LOC_Os12g44000Os.12316.1.S1_at10/1112+27261833..27265116Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os12g44010OsAffx.20111.1.S1_at11/1112+27267698..27269080expressed protein
LOC_Os12g44020Os.15738.1.S1_at11/1112+27270290..27273545expressed protein
LOC_Os12g44020OsAffx.9512.1.S1_x_at3/1112+27270290..27273545expressed protein
LOC_Os12g44030OsAffx.9512.1.S1_x_at1/1112+27276298..27277590expressed protein
LOC_Os12g44040Os.27105.1.S1_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44040Os.27105.1.S2_s_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44040Os.9552.1.S1_s_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44050Os.53424.1.S1_at10/1112+27282857..27283690expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006510biological_processATP-dependent proteolysis
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009058biological_processbiosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009826biological_processunidimensional cell growth
GO:0010027biological_processthylakoid membrane organization and biogenesis
GO:0010205biological_processphotoinhibition
GO:0010206biological_processphotosystem II repair
GO:0015770biological_processsucrose transport
GO:0019748biological_processsecondary metabolism
GO:0048527biological_processlateral root development
GO:0005618cellular_componentcell wall
GO:0005634cellular_componentnucleus
GO:0005829cellular_componentcytosol
GO:0005886cellular_componentplasma membrane
GO:0005887cellular_componentintegral to plasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0016020cellular_componentmembrane
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005351molecular_functionsugar porter activity
GO:0008233molecular_functionpeptidase activity
GO:0008237molecular_functionmetallopeptidase activity
GO:0008270molecular_functionzinc ion binding
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0016298molecular_functionlipase activity
GO:0016301molecular_functionkinase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0016789molecular_functioncarboxylic ester hydrolase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43567.1.S1_x_at--322--267260Chr12:2998266..2998290 (25 bp)
AAGCCGACACAGGTTTACCATATGC
NONE
Os.43567.1.S1_x_at--121--2472Chr04:26662939..26662963 (25 bp)
AACAACAGGTTATGTCCCAGACCAT
NONE
Os.43567.1.S1_x_at--661--869360Chr12:2998325..2998348 (24 bp)
TGTCCCAGACCATACTGTGCCAGGA
NONE
Os.43567.1.S1_x_at--676--303317Chr12:2998382..2998406 (25 bp)
AATCCACATGTCTCTCGGCATCAAG
NONE
Os.43567.1.S1_x_at--596--293305Chr12:2998404..2998428 (25 bp)
AAGGCTCCCCTGATAAGCTAGTTAC
NONE
Os.43567.1.S1_x_at--558--33545Chr12:16424438..16424462 (25 bp)
CACCCATGTGGTCGTACTTGACTTA
NONE
Os.43567.1.S1_x_at--549--813204Chr12:15381720..15381903 (25 bp)
GGACATGGTGGCTTGCCTTGCTCGA
NONE
Os.43567.1.S1_x_at--109--445283Chr12:8927235..8927259 (25 bp)
GCCTTGCTCGAGATCTGGAGCTTGA
NONE
Os.43567.1.S1_x_at--342--853297Chr12:8927250..8927274 (25 bp)
TGGAGCTTGATCCTCGAAATCCTCG
NONE
Os.43567.1.S1_x_at--643--227328Chr12:2998933..2998957 (25 bp)
AAATCCTCGCACTGCGGGTCTTCGG
NONE
Os.43567.1.S1_x_at--563--106127Chr11:1907915..1907939 (25 bp)
TTCGGGCTCCGAAACTATACGCAAA
NONE
Target Sequence 
AAGCCGACACAGGTTTACCATATGCCGACGAGAGGGGTTCCAGACCAACAACAGGTTATGTCCCAGACCATACTGTGCCA
GGAAGCCCAGGGGTCCTCCCCGACACCACCCCGGCGAATCCACATGTCTCTCGGCATCAAGGCTCCCCTGATAAGCTAGT
TACTCAGCCAGGGGTGTCCCATTCCACCCATGTGGTCGTACTTGACTTATGTTTGGATGAAATTCCAAGGAATCGGTCCT
TAAGTGCGAGAGCGGGAAACCGTACACCCGATTTTAAGTTTGAAGGCGACCGTCGATACTGGCACAGGGTGCACGAATAT
CGAGGCGCAACTGGATGGTTACAAGGGGACATGGTGGCTTGCCTTGCTCGAGATCTGGAGCTTGATCCTCGAAATCCTCG
CACTGCGGGTCTTCGGGCTCCGAAACTATACGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43567.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis